miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 65346 0.71 0.655959
Target:  5'- gGCGGAC--GCCaUCCuGCGGCGGGCCgCGg -3'
miRNA:   3'- -CGUCUGuaCGG-AGG-UGUUGCUCGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 103022 0.71 0.655959
Target:  5'- gGCGGcGCuUGCCUCCcCGGCGccugccuccccGGCCCGg -3'
miRNA:   3'- -CGUC-UGuACGGAGGuGUUGC-----------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 26241 0.71 0.666232
Target:  5'- cGCGGcgucgacgacGCGcGCgUCCACGucgGCGGGCCCGa -3'
miRNA:   3'- -CGUC----------UGUaCGgAGGUGU---UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 20420 0.71 0.675453
Target:  5'- gGCGGACcUGCCggCCGCGGCgcugcgcgacgccGAGCgCCGg -3'
miRNA:   3'- -CGUCUGuACGGa-GGUGUUG-------------CUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 46187 0.71 0.676476
Target:  5'- aCGGGCAgcGCCUCgGCGGCGGGCgUGu -3'
miRNA:   3'- cGUCUGUa-CGGAGgUGUUGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 24411 0.7 0.706953
Target:  5'- gGCGGcgccGCGgccGCCUCCGCGgGCGcGCCCGu -3'
miRNA:   3'- -CGUC----UGUa--CGGAGGUGU-UGCuCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 61786 0.7 0.706953
Target:  5'- aGCGG-CGguacGCCUCgGCGACGGucGCCCGc -3'
miRNA:   3'- -CGUCuGUa---CGGAGgUGUUGCU--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 84490 0.7 0.706953
Target:  5'- cGCGGcCAcGCCUCCGCGggcACGAGCgaGa -3'
miRNA:   3'- -CGUCuGUaCGGAGGUGU---UGCUCGggC- -5'
29523 3' -55.5 NC_006151.1 + 92837 0.7 0.706953
Target:  5'- gGCAGcguGCAcGCCUCgGCGACG-GCCgCGg -3'
miRNA:   3'- -CGUC---UGUaCGGAGgUGUUGCuCGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 78358 0.7 0.716996
Target:  5'- cGCGcGCAUGCC-CCAgGAgGAcGCCCGu -3'
miRNA:   3'- -CGUcUGUACGGaGGUgUUgCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 32499 0.7 0.716996
Target:  5'- gGCGGGCGU-CCUCCACGaucGCGuGCgCCu -3'
miRNA:   3'- -CGUCUGUAcGGAGGUGU---UGCuCG-GGc -5'
29523 3' -55.5 NC_006151.1 + 86229 0.7 0.736852
Target:  5'- cGCAGGCGgcgcgcgcgGCCUCgGCGuccGCGcGGCCCu -3'
miRNA:   3'- -CGUCUGUa--------CGGAGgUGU---UGC-UCGGGc -5'
29523 3' -55.5 NC_006151.1 + 80040 0.7 0.746646
Target:  5'- cGCAGGCGggcgGCacgUCgCACAGCGAGgCCa -3'
miRNA:   3'- -CGUCUGUa---CGg--AG-GUGUUGCUCgGGc -5'
29523 3' -55.5 NC_006151.1 + 108262 0.7 0.746646
Target:  5'- cGCGGGagacGCCUCCGCG-CGcccauuGGCCCGg -3'
miRNA:   3'- -CGUCUgua-CGGAGGUGUuGC------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 55336 0.69 0.756338
Target:  5'- aGCGGGCggGCgCUCCGCAcguUGAGCaggCCGg -3'
miRNA:   3'- -CGUCUGuaCG-GAGGUGUu--GCUCG---GGC- -5'
29523 3' -55.5 NC_006151.1 + 44808 0.69 0.756338
Target:  5'- gGCGGGCGcGCgCUCCGcCGACGAcGUCCu -3'
miRNA:   3'- -CGUCUGUaCG-GAGGU-GUUGCU-CGGGc -5'
29523 3' -55.5 NC_006151.1 + 97919 0.69 0.765919
Target:  5'- -aGGGCccGCUUcCCACGACGGcgcGCCCGg -3'
miRNA:   3'- cgUCUGuaCGGA-GGUGUUGCU---CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 24909 0.69 0.765919
Target:  5'- cGCGGGCAcgGUgUCCAuCAACGGGCaCGa -3'
miRNA:   3'- -CGUCUGUa-CGgAGGU-GUUGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 71080 0.69 0.765919
Target:  5'- cGCAGcgucGCGUGCCgCCGCAGCGucUCCa -3'
miRNA:   3'- -CGUC----UGUACGGaGGUGUUGCucGGGc -5'
29523 3' -55.5 NC_006151.1 + 64148 0.69 0.775379
Target:  5'- -gGGACggGCCUCCcCGGCGGGacggCCGg -3'
miRNA:   3'- cgUCUGuaCGGAGGuGUUGCUCg---GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.