miRNA display CGI


Results 61 - 80 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 83958 0.68 0.820553
Target:  5'- --cGGCG-GCCUCCGCGACGcGCgCGc -3'
miRNA:   3'- cguCUGUaCGGAGGUGUUGCuCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 71883 0.68 0.820553
Target:  5'- gGCGGGCAU-CCUCC---GCGGGCgCCGc -3'
miRNA:   3'- -CGUCUGUAcGGAGGuguUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 26459 0.68 0.8291
Target:  5'- cGCAGcacCAcGCgCUCCcCcGCGGGCCCGg -3'
miRNA:   3'- -CGUCu--GUaCG-GAGGuGuUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 41882 0.68 0.8291
Target:  5'- cGCGGGCuacGCCgCCA--GCGAGCuCCGg -3'
miRNA:   3'- -CGUCUGua-CGGaGGUguUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 57380 0.68 0.8291
Target:  5'- cGCGcGCGcGCCgccgCCGcCAugGGGCCCGu -3'
miRNA:   3'- -CGUcUGUaCGGa---GGU-GUugCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 9637 0.68 0.8291
Target:  5'- gGguGGCGUaacCCagggCCACGACGAGCaCCGc -3'
miRNA:   3'- -CguCUGUAc--GGa---GGUGUUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 111492 0.68 0.8291
Target:  5'- cGCgGGACGUGCCcgCCGCcuGgGAGCCgGc -3'
miRNA:   3'- -CG-UCUGUACGGa-GGUGu-UgCUCGGgC- -5'
29523 3' -55.5 NC_006151.1 + 17571 0.68 0.837466
Target:  5'- cGCcGACAcggGCCUCCuggacuACAGCGAGaUCCa -3'
miRNA:   3'- -CGuCUGUa--CGGAGG------UGUUGCUC-GGGc -5'
29523 3' -55.5 NC_006151.1 + 21016 0.68 0.837466
Target:  5'- gGCGGAgGcgGCgUCCACGgcggcgGCGGGCgCCGa -3'
miRNA:   3'- -CGUCUgUa-CGgAGGUGU------UGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 87971 0.68 0.837466
Target:  5'- cGCGGACG-GCCagCCGCcGCGGGaCCuCGg -3'
miRNA:   3'- -CGUCUGUaCGGa-GGUGuUGCUC-GG-GC- -5'
29523 3' -55.5 NC_006151.1 + 42266 0.68 0.84321
Target:  5'- cGUGGACgcGUGCCUgCGCGagggccaggcguggACGGGgCCCGg -3'
miRNA:   3'- -CGUCUG--UACGGAgGUGU--------------UGCUC-GGGC- -5'
29523 3' -55.5 NC_006151.1 + 53940 0.68 0.845643
Target:  5'- aGCGGACGUgguccGCCUCgaGCAGCgccGAGgCCGg -3'
miRNA:   3'- -CGUCUGUA-----CGGAGg-UGUUG---CUCgGGC- -5'
29523 3' -55.5 NC_006151.1 + 29142 0.68 0.845643
Target:  5'- uGCGcGACGgggGCCUgCGCGACGuGCgCGu -3'
miRNA:   3'- -CGU-CUGUa--CGGAgGUGUUGCuCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 65522 0.68 0.845643
Target:  5'- gGCGGGCGcgcgGCCcCCACGcugaGCGugcGCCCGc -3'
miRNA:   3'- -CGUCUGUa---CGGaGGUGU----UGCu--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 64767 0.68 0.845643
Target:  5'- cGCcGGCcgggGCCUcgucgCCGCGACGGcGCCCGu -3'
miRNA:   3'- -CGuCUGua--CGGA-----GGUGUUGCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 27334 0.68 0.845643
Target:  5'- uCGGGCA-GCaCgaagCCGC-GCGAGCCCGc -3'
miRNA:   3'- cGUCUGUaCG-Ga---GGUGuUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 119474 0.68 0.845643
Target:  5'- --cGACgGUGCggaCCACGAgGAGCCCGa -3'
miRNA:   3'- cguCUG-UACGga-GGUGUUgCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 115220 0.67 0.852043
Target:  5'- gGCcGACGggcccauuggccgggGCCUCaCACGugggccccggggacGCGGGCCCGg -3'
miRNA:   3'- -CGuCUGUa--------------CGGAG-GUGU--------------UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 85860 0.67 0.853623
Target:  5'- cCAGGCcgGCCUCgGCcGCGGccGCCuCGa -3'
miRNA:   3'- cGUCUGuaCGGAGgUGuUGCU--CGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 47094 0.67 0.853623
Target:  5'- aGCGGAgGgccGCCUCCACGcgcgcGCGGuGCCgGc -3'
miRNA:   3'- -CGUCUgUa--CGGAGGUGU-----UGCU-CGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.