miRNA display CGI


Results 61 - 80 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 77453 0.67 0.883449
Target:  5'- cGCGG-CGUcgagcGCCUCCGCAAaguccGCCCGc -3'
miRNA:   3'- -CGUCuGUA-----CGGAGGUGUUgcu--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 41483 0.67 0.883449
Target:  5'- gGCGGGCG-GCCgucgcgcaaguUCCGCccgcgcacccGCGAGCCCa -3'
miRNA:   3'- -CGUCUGUaCGG-----------AGGUGu---------UGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 15773 0.67 0.883449
Target:  5'- cGUcGGCGgcGCuCUCCuGCGACGAGCUCGu -3'
miRNA:   3'- -CGuCUGUa-CG-GAGG-UGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 42574 0.67 0.876319
Target:  5'- -uGGAgGUGCUgcgCCGCGGCGcgcgcgcGCCCGa -3'
miRNA:   3'- cgUCUgUACGGa--GGUGUUGCu------CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 57290 0.67 0.876319
Target:  5'- cGCgAGAuCGUGgCCgCCGCGcugcccccgGCGGGCCCGc -3'
miRNA:   3'- -CG-UCU-GUAC-GGaGGUGU---------UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 37333 0.67 0.876319
Target:  5'- cGCGGcCGUGCUggCCACGACGcuCUCGc -3'
miRNA:   3'- -CGUCuGUACGGa-GGUGUUGCucGGGC- -5'
29523 3' -55.5 NC_006151.1 + 121171 0.67 0.876319
Target:  5'- cGCGGGCAcgGCgUCCACGuccgcgccgaGCGucGUCCGg -3'
miRNA:   3'- -CGUCUGUa-CGgAGGUGU----------UGCu-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 75477 0.67 0.876319
Target:  5'- cGCGGcgGCccGCCggcgCCGCGgccACGGGCUCGg -3'
miRNA:   3'- -CGUC--UGuaCGGa---GGUGU---UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 30488 0.67 0.876319
Target:  5'- gGCGGACGcGCgCgcgCCGC--CGAGCCUGg -3'
miRNA:   3'- -CGUCUGUaCG-Ga--GGUGuuGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 10297 0.67 0.876319
Target:  5'- cGCGGGCGUggGCCUCgGCcACGcGUCCc -3'
miRNA:   3'- -CGUCUGUA--CGGAGgUGuUGCuCGGGc -5'
29523 3' -55.5 NC_006151.1 + 42221 0.67 0.868967
Target:  5'- cGgGGGCAUGUgcgCCAuCAGCGAGCUCc -3'
miRNA:   3'- -CgUCUGUACGga-GGU-GUUGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 139281 0.67 0.868967
Target:  5'- cGCGGcCGUcaCCUCCucgagGCAgGCGGGCCCGa -3'
miRNA:   3'- -CGUCuGUAc-GGAGG-----UGU-UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 85465 0.67 0.868967
Target:  5'- cGCGGACc-GCCUCCGgcGCG-GCCgCGg -3'
miRNA:   3'- -CGUCUGuaCGGAGGUguUGCuCGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 85136 0.67 0.868967
Target:  5'- gGCGGcgcGCcgGCCUCCGCGuagGCGcGCgCGa -3'
miRNA:   3'- -CGUC---UGuaCGGAGGUGU---UGCuCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 3710 0.67 0.868967
Target:  5'- gGCGGAU---CgUCCggACGGCGGGCCCGa -3'
miRNA:   3'- -CGUCUGuacGgAGG--UGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 37093 0.67 0.868967
Target:  5'- cGCGGGCGcGCgC-CCGCcGCGGcGCCCGc -3'
miRNA:   3'- -CGUCUGUaCG-GaGGUGuUGCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 105376 0.67 0.865966
Target:  5'- aGguGACG-GCCgcgcugcucgcgcUCCGCGACGcgauccccggggccGGCCCGg -3'
miRNA:   3'- -CguCUGUaCGG-------------AGGUGUUGC--------------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 139084 0.67 0.864453
Target:  5'- --cGACGgucGCCUCCccggcgcggggguccGCGGCGcGGCCCGg -3'
miRNA:   3'- cguCUGUa--CGGAGG---------------UGUUGC-UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 79765 0.67 0.8614
Target:  5'- -uGGGCGUGCgCgUUCGCGGCGAcguggcGCCCGu -3'
miRNA:   3'- cgUCUGUACG-G-AGGUGUUGCU------CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 84620 0.67 0.8614
Target:  5'- aGCAGGUgcGCCagCGCGugGAGCUCGc -3'
miRNA:   3'- -CGUCUGuaCGGagGUGUugCUCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.