miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 23414 0.66 0.897027
Target:  5'- --cGGCGUG-CUCCACGGgcAGCCCGu -3'
miRNA:   3'- cguCUGUACgGAGGUGUUgcUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 21468 0.66 0.897027
Target:  5'- gGCGGcGCGUGCCgcuUCCACGcgcGCGucgcGCUCGa -3'
miRNA:   3'- -CGUC-UGUACGG---AGGUGU---UGCu---CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 19535 0.66 0.897027
Target:  5'- cGCGGGCc-GCCUCgGCcucgcCGAcGCCCGg -3'
miRNA:   3'- -CGUCUGuaCGGAGgUGuu---GCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 1172 0.66 0.897027
Target:  5'- cCAGACcgGCCgggaCgAgAGCGAGCgCCGu -3'
miRNA:   3'- cGUCUGuaCGGa---GgUgUUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 20495 0.66 0.895711
Target:  5'- cGCGGACGccggcgacggggGCgUCgGCGACGAagacggGCCCGg -3'
miRNA:   3'- -CGUCUGUa-----------CGgAGgUGUUGCU------CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 111842 0.67 0.890353
Target:  5'- gGCGGGgAUGCCgcgCCGgcACGAGCgCa -3'
miRNA:   3'- -CGUCUgUACGGa--GGUguUGCUCGgGc -5'
29523 3' -55.5 NC_006151.1 + 48935 0.67 0.890353
Target:  5'- -gAGGCGUGUaacUUCCcguCGGCGGGCUCGg -3'
miRNA:   3'- cgUCUGUACG---GAGGu--GUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 139529 0.67 0.890353
Target:  5'- cGgGGGCAgGCCgggCGCGggcuccGCGGGCCCGg -3'
miRNA:   3'- -CgUCUGUaCGGag-GUGU------UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 111710 0.67 0.890353
Target:  5'- cGgGGACGcGCCUgCgGCGGCGGGCgCGc -3'
miRNA:   3'- -CgUCUGUaCGGA-GgUGUUGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 61160 0.67 0.890353
Target:  5'- gGCAG-CGcGCCUCCGCGuccGCGAGgaCGg -3'
miRNA:   3'- -CGUCuGUaCGGAGGUGU---UGCUCggGC- -5'
29523 3' -55.5 NC_006151.1 + 32183 0.67 0.890353
Target:  5'- cGCGGGCGggggguacgcgGCCUggcCCACGaacgcggcggccGCGuGCCCGg -3'
miRNA:   3'- -CGUCUGUa----------CGGA---GGUGU------------UGCuCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 74134 0.67 0.890353
Target:  5'- cGCGGGCGcGUCgCCGCccGCGAGCgCGg -3'
miRNA:   3'- -CGUCUGUaCGGaGGUGu-UGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 16081 0.67 0.890353
Target:  5'- cGCGGGgGUGgCgggggCCGCGGCcgagucgacggGAGCCCGc -3'
miRNA:   3'- -CGUCUgUACgGa----GGUGUUG-----------CUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 1783 0.67 0.889673
Target:  5'- -gAGGCAugucUGCCUCCcacggcggcugGCGGCGGacgcgguGCCCGg -3'
miRNA:   3'- cgUCUGU----ACGGAGG-----------UGUUGCU-------CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 62456 0.67 0.883449
Target:  5'- -aGGACG-GUCUCCAgGAuCGuGCCCGc -3'
miRNA:   3'- cgUCUGUaCGGAGGUgUU-GCuCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 56657 0.67 0.883449
Target:  5'- aGCGGg---GCCUCCcCGGCGcccGGCCCa -3'
miRNA:   3'- -CGUCuguaCGGAGGuGUUGC---UCGGGc -5'
29523 3' -55.5 NC_006151.1 + 89039 0.67 0.883449
Target:  5'- cGCuGGCGcggcGCUUCgGCGACGAggcGCCCGc -3'
miRNA:   3'- -CGuCUGUa---CGGAGgUGUUGCU---CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 77453 0.67 0.883449
Target:  5'- cGCGG-CGUcgagcGCCUCCGCAAaguccGCCCGc -3'
miRNA:   3'- -CGUCuGUA-----CGGAGGUGUUgcu--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 41483 0.67 0.883449
Target:  5'- gGCGGGCG-GCCgucgcgcaaguUCCGCccgcgcacccGCGAGCCCa -3'
miRNA:   3'- -CGUCUGUaCGG-----------AGGUGu---------UGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 106769 0.67 0.883449
Target:  5'- aGCAccGCGaGCC-CCugcuCGACGAGCCCGc -3'
miRNA:   3'- -CGUc-UGUaCGGaGGu---GUUGCUCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.