Results 81 - 100 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29523 | 3' | -55.5 | NC_006151.1 | + | 139930 | 0.67 | 0.8614 |
Target: 5'- aGCAGcGCGggaGCggggUCCGgAGCGGGCCCGa -3' miRNA: 3'- -CGUC-UGUa--CGg---AGGUgUUGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 18086 | 0.67 | 0.853623 |
Target: 5'- --cGACAUGCUgggCCGCAucGCGGccGCCUGg -3' miRNA: 3'- cguCUGUACGGa--GGUGU--UGCU--CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 139425 | 0.67 | 0.853623 |
Target: 5'- cCAGGCG-GCCU-CGCGggcGCGGGCCCc -3' miRNA: 3'- cGUCUGUaCGGAgGUGU---UGCUCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 85860 | 0.67 | 0.853623 |
Target: 5'- cCAGGCcgGCCUCgGCcGCGGccGCCuCGa -3' miRNA: 3'- cGUCUGuaCGGAGgUGuUGCU--CGG-GC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 75410 | 0.67 | 0.853623 |
Target: 5'- gGCGGGCAcgGgCUCgGCGACGGGCagguCGg -3' miRNA: 3'- -CGUCUGUa-CgGAGgUGUUGCUCGg---GC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 47094 | 0.67 | 0.853623 |
Target: 5'- aGCGGAgGgccGCCUCCACGcgcgcGCGGuGCCgGc -3' miRNA: 3'- -CGUCUgUa--CGGAGGUGU-----UGCU-CGGgC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 3801 | 0.67 | 0.853623 |
Target: 5'- gGCGGGCGcGCCgCC-CGACaGGCCCu -3' miRNA: 3'- -CGUCUGUaCGGaGGuGUUGcUCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 84716 | 0.67 | 0.853623 |
Target: 5'- cGCAGcGCcgcgGCCaCCGCGGCcgccGAGCCCGu -3' miRNA: 3'- -CGUC-UGua--CGGaGGUGUUG----CUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 75890 | 0.67 | 0.853623 |
Target: 5'- cGCGGGCGU-CCagcCCGcCGAUGAGCUCGg -3' miRNA: 3'- -CGUCUGUAcGGa--GGU-GUUGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 115220 | 0.67 | 0.852043 |
Target: 5'- gGCcGACGggcccauuggccgggGCCUCaCACGugggccccggggacGCGGGCCCGg -3' miRNA: 3'- -CGuCUGUa--------------CGGAG-GUGU--------------UGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 65522 | 0.68 | 0.845643 |
Target: 5'- gGCGGGCGcgcgGCCcCCACGcugaGCGugcGCCCGc -3' miRNA: 3'- -CGUCUGUa---CGGaGGUGU----UGCu--CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 29142 | 0.68 | 0.845643 |
Target: 5'- uGCGcGACGgggGCCUgCGCGACGuGCgCGu -3' miRNA: 3'- -CGU-CUGUa--CGGAgGUGUUGCuCGgGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 64767 | 0.68 | 0.845643 |
Target: 5'- cGCcGGCcgggGCCUcgucgCCGCGACGGcGCCCGu -3' miRNA: 3'- -CGuCUGua--CGGA-----GGUGUUGCU-CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 27334 | 0.68 | 0.845643 |
Target: 5'- uCGGGCA-GCaCgaagCCGC-GCGAGCCCGc -3' miRNA: 3'- cGUCUGUaCG-Ga---GGUGuUGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 119474 | 0.68 | 0.845643 |
Target: 5'- --cGACgGUGCggaCCACGAgGAGCCCGa -3' miRNA: 3'- cguCUG-UACGga-GGUGUUgCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 53940 | 0.68 | 0.845643 |
Target: 5'- aGCGGACGUgguccGCCUCgaGCAGCgccGAGgCCGg -3' miRNA: 3'- -CGUCUGUA-----CGGAGg-UGUUG---CUCgGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 42266 | 0.68 | 0.84321 |
Target: 5'- cGUGGACgcGUGCCUgCGCGagggccaggcguggACGGGgCCCGg -3' miRNA: 3'- -CGUCUG--UACGGAgGUGU--------------UGCUC-GGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 21016 | 0.68 | 0.837466 |
Target: 5'- gGCGGAgGcgGCgUCCACGgcggcgGCGGGCgCCGa -3' miRNA: 3'- -CGUCUgUa-CGgAGGUGU------UGCUCG-GGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 87971 | 0.68 | 0.837466 |
Target: 5'- cGCGGACG-GCCagCCGCcGCGGGaCCuCGg -3' miRNA: 3'- -CGUCUGUaCGGa-GGUGuUGCUC-GG-GC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 17571 | 0.68 | 0.837466 |
Target: 5'- cGCcGACAcggGCCUCCuggacuACAGCGAGaUCCa -3' miRNA: 3'- -CGuCUGUa--CGGAGG------UGUUGCUC-GGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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