miRNA display CGI


Results 61 - 80 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 44091 0.68 0.811831
Target:  5'- gGCGGcgucguGCAccGCCUCCucgACGacuACGGGCCCGg -3'
miRNA:   3'- -CGUC------UGUa-CGGAGG---UGU---UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 44808 0.69 0.756338
Target:  5'- gGCGGGCGcGCgCUCCGcCGACGAcGUCCu -3'
miRNA:   3'- -CGUCUGUaCG-GAGGU-GUUGCU-CGGGc -5'
29523 3' -55.5 NC_006151.1 + 46187 0.71 0.676476
Target:  5'- aCGGGCAgcGCCUCgGCGGCGGGCgUGu -3'
miRNA:   3'- cGUCUGUa-CGGAGgUGUUGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 46310 0.66 0.921358
Target:  5'- gGCAGGuccaCCgagCCGCAGCGcucGGCCCGg -3'
miRNA:   3'- -CGUCUguacGGa--GGUGUUGC---UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 46652 0.66 0.903468
Target:  5'- gGCGcGCggGCUUUUAgCGGCGGGCCCGc -3'
miRNA:   3'- -CGUcUGuaCGGAGGU-GUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 47094 0.67 0.853623
Target:  5'- aGCGGAgGgccGCCUCCACGcgcgcGCGGuGCCgGc -3'
miRNA:   3'- -CGUCUgUa--CGGAGGUGU-----UGCU-CGGgC- -5'
29523 3' -55.5 NC_006151.1 + 47526 0.72 0.614759
Target:  5'- -aGGGCGUGCgguugaagCUCUGCAGCGAgaGCCCGa -3'
miRNA:   3'- cgUCUGUACG--------GAGGUGUUGCU--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 48935 0.67 0.890353
Target:  5'- -gAGGCGUGUaacUUCCcguCGGCGGGCUCGg -3'
miRNA:   3'- cgUCUGUACG---GAGGu--GUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 51986 0.66 0.917953
Target:  5'- cGUAGACcUGCUcgCCGCGcACGcuggcgugcaccagcAGCCCGg -3'
miRNA:   3'- -CGUCUGuACGGa-GGUGU-UGC---------------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 53940 0.68 0.845643
Target:  5'- aGCGGACGUgguccGCCUCgaGCAGCgccGAGgCCGg -3'
miRNA:   3'- -CGUCUGUA-----CGGAGg-UGUUG---CUCgGGC- -5'
29523 3' -55.5 NC_006151.1 + 55090 0.69 0.781925
Target:  5'- cGCAGGCucggcgcgagcGCgUCCGCGGCGuccgcggccgcgaGGCCCGg -3'
miRNA:   3'- -CGUCUGua---------CGgAGGUGUUGC-------------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 55336 0.69 0.756338
Target:  5'- aGCGGGCggGCgCUCCGCAcguUGAGCaggCCGg -3'
miRNA:   3'- -CGUCUGuaCG-GAGGUGUu--GCUCG---GGC- -5'
29523 3' -55.5 NC_006151.1 + 55885 0.66 0.909671
Target:  5'- gGCGGACGUcuccGCCggcaCCAuCGACGccAGCUCGg -3'
miRNA:   3'- -CGUCUGUA----CGGa---GGU-GUUGC--UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 56657 0.67 0.883449
Target:  5'- aGCGGg---GCCUCCcCGGCGcccGGCCCa -3'
miRNA:   3'- -CGUCuguaCGGAGGuGUUGC---UCGGGc -5'
29523 3' -55.5 NC_006151.1 + 57290 0.67 0.876319
Target:  5'- cGCgAGAuCGUGgCCgCCGCGcugcccccgGCGGGCCCGc -3'
miRNA:   3'- -CG-UCU-GUAC-GGaGGUGU---------UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 57380 0.68 0.8291
Target:  5'- cGCGcGCGcGCCgccgCCGcCAugGGGCCCGu -3'
miRNA:   3'- -CGUcUGUaCGGa---GGU-GUugCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 58104 0.66 0.903468
Target:  5'- cGCuGGCGcGCCUgCGCGugGucCCCGg -3'
miRNA:   3'- -CGuCUGUaCGGAgGUGUugCucGGGC- -5'
29523 3' -55.5 NC_006151.1 + 59899 0.72 0.594207
Target:  5'- uCGGGCggGcCCUCgACcGCGGGCCCGa -3'
miRNA:   3'- cGUCUGuaC-GGAGgUGuUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 61160 0.67 0.890353
Target:  5'- gGCAG-CGcGCCUCCGCGuccGCGAGgaCGg -3'
miRNA:   3'- -CGUCuGUaCGGAGGUGU---UGCUCggGC- -5'
29523 3' -55.5 NC_006151.1 + 61786 0.7 0.706953
Target:  5'- aGCGG-CGguacGCCUCgGCGACGGucGCCCGc -3'
miRNA:   3'- -CGUCuGUa---CGGAGgUGUUGCU--CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.