miRNA display CGI


Results 81 - 100 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 5' -66.2 NC_006151.1 + 4265 0.66 0.453454
Target:  5'- gGUCGgGgCGCUGgagcuccUGGCGGCGACgcugCCGCa -3'
miRNA:   3'- -CGGCgCgGCGGC-------GCCGUCGCUG----GGCG- -5'
29523 5' -66.2 NC_006151.1 + 70148 0.66 0.449187
Target:  5'- uCCGCGUccagcaugggcggggCGCCGCGcGUGGCGAagagguUCUGCg -3'
miRNA:   3'- cGGCGCG---------------GCGGCGC-CGUCGCU------GGGCG- -5'
29523 5' -66.2 NC_006151.1 + 64227 0.66 0.449187
Target:  5'- aGCCGCGCaugcgcagacaccauCGUcccggCGCGGUcuCGACgCCGCg -3'
miRNA:   3'- -CGGCGCG---------------GCG-----GCGCCGucGCUG-GGCG- -5'
29523 5' -66.2 NC_006151.1 + 79990 0.66 0.445789
Target:  5'- uGCU-CGCagggGCgGCGGCGGCG-CCCGa -3'
miRNA:   3'- -CGGcGCGg---CGgCGCCGUCGCuGGGCg -5'
29523 5' -66.2 NC_006151.1 + 84342 0.66 0.445789
Target:  5'- gGgCGUacaGCUGCCGgugGGUGGCG-CCCGCg -3'
miRNA:   3'- -CgGCG---CGGCGGCg--CCGUCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 73582 0.66 0.445789
Target:  5'- aGCuCGCGCgCGCCcaCGcGCAGCGcCgCCGUc -3'
miRNA:   3'- -CG-GCGCG-GCGGc-GC-CGUCGCuG-GGCG- -5'
29523 5' -66.2 NC_006151.1 + 136611 0.66 0.445789
Target:  5'- cCCG-GCCcCCGCGGCGGCcauCuuGCc -3'
miRNA:   3'- cGGCgCGGcGGCGCCGUCGcu-GggCG- -5'
29523 5' -66.2 NC_006151.1 + 93129 0.66 0.445789
Target:  5'- gGCCGC-CCGgCGCcuGGCcGCGGCCUc- -3'
miRNA:   3'- -CGGCGcGGCgGCG--CCGuCGCUGGGcg -5'
29523 5' -66.2 NC_006151.1 + 90208 0.66 0.445789
Target:  5'- cGCUG-GCgCGCaCGCGGCacAGCuGCCgCGCg -3'
miRNA:   3'- -CGGCgCG-GCG-GCGCCG--UCGcUGG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 61190 0.66 0.445789
Target:  5'- cGCCcaGCGUCacguugaagacgGCCGCggGGCAGCGcgccUCCGCg -3'
miRNA:   3'- -CGG--CGCGG------------CGGCG--CCGUCGCu---GGGCG- -5'
29523 5' -66.2 NC_006151.1 + 53466 0.66 0.445789
Target:  5'- uGCCGCGCagGCUGCGG--GCGACguuguUCGUg -3'
miRNA:   3'- -CGGCGCGg-CGGCGCCguCGCUG-----GGCG- -5'
29523 5' -66.2 NC_006151.1 + 41892 0.66 0.445789
Target:  5'- -aCGCGCaCGUCGCGGgcuacgccgcCAGCGAgcUCCGg -3'
miRNA:   3'- cgGCGCG-GCGGCGCC----------GUCGCU--GGGCg -5'
29523 5' -66.2 NC_006151.1 + 29498 0.66 0.445789
Target:  5'- gGCCGCGCaGCCcuCGGacgaGGUGACCaccgugCGCg -3'
miRNA:   3'- -CGGCGCGgCGGc-GCCg---UCGCUGG------GCG- -5'
29523 5' -66.2 NC_006151.1 + 6825 0.66 0.445789
Target:  5'- cCCGCGgCGcCCGUGG-GGCG-CUCGCc -3'
miRNA:   3'- cGGCGCgGC-GGCGCCgUCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 105710 0.66 0.445789
Target:  5'- gGCCcUGCCGCaCGCGGUgAGCG--CCGUg -3'
miRNA:   3'- -CGGcGCGGCG-GCGCCG-UCGCugGGCG- -5'
29523 5' -66.2 NC_006151.1 + 139199 0.66 0.444096
Target:  5'- aGCagGCGCucgaggaCGCCGCGGCaggccaggacgcaGGCG-UCCGCc -3'
miRNA:   3'- -CGg-CGCG-------GCGGCGCCG-------------UCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 40232 0.66 0.443251
Target:  5'- uGCgCGCGauggaggacCUGCUGCGGCacauccgcgccaugGGCGGCCaCGUg -3'
miRNA:   3'- -CG-GCGC---------GGCGGCGCCG--------------UCGCUGG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 79543 0.66 0.437359
Target:  5'- -aCGCGCgCGCCGUGGgGcucGCGucgUCCGCc -3'
miRNA:   3'- cgGCGCG-GCGGCGCCgU---CGCu--GGGCG- -5'
29523 5' -66.2 NC_006151.1 + 81804 0.66 0.437359
Target:  5'- -aCGCGCCaGCCGCucGUGGCc-CCCGCc -3'
miRNA:   3'- cgGCGCGG-CGGCGc-CGUCGcuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 97674 0.66 0.437359
Target:  5'- aGCCccuCGCCaCCGCcGCAGCG-CCUGUc -3'
miRNA:   3'- -CGGc--GCGGcGGCGcCGUCGCuGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.