miRNA display CGI


Results 61 - 80 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 5' -66.2 NC_006151.1 + 39168 0.66 0.462918
Target:  5'- uGCagGCGCUGCaGCGGCugacGUGGCUCGa -3'
miRNA:   3'- -CGg-CGCGGCGgCGCCGu---CGCUGGGCg -5'
29523 5' -66.2 NC_006151.1 + 37922 0.66 0.462918
Target:  5'- aUCGgGCCcgaGCUGCGGCAcGaCGcCCUGCg -3'
miRNA:   3'- cGGCgCGG---CGGCGCCGU-C-GCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 36027 0.66 0.462918
Target:  5'- uUgGCGCCaacCCGUGGCuG-GACCUGCu -3'
miRNA:   3'- cGgCGCGGc--GGCGCCGuCgCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 19344 0.66 0.462918
Target:  5'- uGCC-CGCCGCCGUccggcuccacGGUGGUGcggcuggaGCCCGa -3'
miRNA:   3'- -CGGcGCGGCGGCG----------CCGUCGC--------UGGGCg -5'
29523 5' -66.2 NC_006151.1 + 8427 0.66 0.462918
Target:  5'- gGCCGCGUCGUccuCGgGGCGGUccCCCu- -3'
miRNA:   3'- -CGGCGCGGCG---GCgCCGUCGcuGGGcg -5'
29523 5' -66.2 NC_006151.1 + 3262 0.66 0.462918
Target:  5'- aUCGUgGCCaCCGCGGgGGCgGugCUGCa -3'
miRNA:   3'- cGGCG-CGGcGGCGCCgUCG-CugGGCG- -5'
29523 5' -66.2 NC_006151.1 + 29148 0.66 0.462918
Target:  5'- -aCGUGCUG-CGCGaCGGgGGCCUGCg -3'
miRNA:   3'- cgGCGCGGCgGCGCcGUCgCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 4223 0.66 0.462918
Target:  5'- cGCgCGCGucuCCGgCGCGaCGGCcacGCCCGCg -3'
miRNA:   3'- -CG-GCGC---GGCgGCGCcGUCGc--UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 124332 0.66 0.462054
Target:  5'- gGCgCGCGCgCGUaguaccaguccagCGUGGCGGUGAaguuCUCGCg -3'
miRNA:   3'- -CG-GCGCG-GCG-------------GCGCCGUCGCU----GGGCG- -5'
29523 5' -66.2 NC_006151.1 + 19968 0.66 0.462054
Target:  5'- uGCCGCaccugaaggaggaGCUGgCGCGcuucaUGGUGGCCCGCg -3'
miRNA:   3'- -CGGCG-------------CGGCgGCGCc----GUCGCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 11802 0.66 0.462054
Target:  5'- cGCCGCagauCCGaCCGCGcGCGGCGucacaucucaaacAUCCGg -3'
miRNA:   3'- -CGGCGc---GGC-GGCGC-CGUCGC-------------UGGGCg -5'
29523 5' -66.2 NC_006151.1 + 130630 0.66 0.457743
Target:  5'- cGCCGCcCC-CCGCGGCcacAccgagccuucuccgcGCGGuCCCGCc -3'
miRNA:   3'- -CGGCGcGGcGGCGCCG---U---------------CGCU-GGGCG- -5'
29523 5' -66.2 NC_006151.1 + 35313 0.66 0.45431
Target:  5'- gGCCGCcaaGCCGCgGGguGCucccCCCGCc -3'
miRNA:   3'- -CGGCGcggCGGCG-CCguCGcu--GGGCG- -5'
29523 5' -66.2 NC_006151.1 + 18189 0.66 0.45431
Target:  5'- aGCCGCcgGCCGUCaaCGGCacggGGC-ACCUGCg -3'
miRNA:   3'- -CGGCG--CGGCGGc-GCCG----UCGcUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 13039 0.66 0.45431
Target:  5'- gGgCGCGCCGaCCGuCGaggacuGCAGCGGCgCCa- -3'
miRNA:   3'- -CgGCGCGGC-GGC-GC------CGUCGCUG-GGcg -5'
29523 5' -66.2 NC_006151.1 + 106252 0.66 0.45431
Target:  5'- uCCGCcuccuccuCCGCCGCGGCcuccccggccccGGCcccggaGCCCGCc -3'
miRNA:   3'- cGGCGc-------GGCGGCGCCG------------UCGc-----UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 90048 0.66 0.45431
Target:  5'- gGCCGUgagcagguGCCGCC-CGaGCAGCccGGCCuCGUc -3'
miRNA:   3'- -CGGCG--------CGGCGGcGC-CGUCG--CUGG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 51419 0.66 0.45431
Target:  5'- aCCGC-CCGCUGCcuGCuGCG-CCUGCu -3'
miRNA:   3'- cGGCGcGGCGGCGc-CGuCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 28234 0.66 0.45431
Target:  5'- gGCCGCuGCCGCCGagaCGGCcuCGucGCCaaagaGCa -3'
miRNA:   3'- -CGGCG-CGGCGGC---GCCGucGC--UGGg----CG- -5'
29523 5' -66.2 NC_006151.1 + 15353 0.66 0.45431
Target:  5'- cGUCGuCGCCaGCaCGCGcGCgaAGCGcuccguggGCCCGCc -3'
miRNA:   3'- -CGGC-GCGG-CG-GCGC-CG--UCGC--------UGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.