miRNA display CGI


Results 41 - 60 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 5' -66.2 NC_006151.1 + 31229 0.66 0.471612
Target:  5'- cGCuCGuCGCCGCCGCcaGGCGcuGCGugUgGg -3'
miRNA:   3'- -CG-GC-GCGGCGGCG--CCGU--CGCugGgCg -5'
29523 5' -66.2 NC_006151.1 + 33867 0.66 0.471612
Target:  5'- cCCGCGCucuucacccCGCCGCcGUcG-GACCCGCc -3'
miRNA:   3'- cGGCGCG---------GCGGCGcCGuCgCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 45605 0.66 0.471612
Target:  5'- -gCGCGUCGuCCGCGuucuCGGCGGCC-GCc -3'
miRNA:   3'- cgGCGCGGC-GGCGCc---GUCGCUGGgCG- -5'
29523 5' -66.2 NC_006151.1 + 118957 0.66 0.471612
Target:  5'- aGCCcguaaaaguuggGCGCCGCCacguuGCaGCGcGCGGCCC-Cg -3'
miRNA:   3'- -CGG------------CGCGGCGG-----CGcCGU-CGCUGGGcG- -5'
29523 5' -66.2 NC_006151.1 + 6158 0.66 0.471612
Target:  5'- -gCGCGgguuCCGCCGCGcGguGCucGACgCGCu -3'
miRNA:   3'- cgGCGC----GGCGGCGC-CguCG--CUGgGCG- -5'
29523 5' -66.2 NC_006151.1 + 17883 0.66 0.471612
Target:  5'- uGCgCGUGCCcgGCgagCGCGGCacgugcuacAGCcGCCCGCu -3'
miRNA:   3'- -CG-GCGCGG--CG---GCGCCG---------UCGcUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 21277 0.66 0.471612
Target:  5'- cGUgGUGCCGCCG-GaGCuguaCGACCCGg -3'
miRNA:   3'- -CGgCGCGGCGGCgC-CGuc--GCUGGGCg -5'
29523 5' -66.2 NC_006151.1 + 17069 0.66 0.470739
Target:  5'- cCCGCGCUGCuggccagccgcguCGgGGCGaUGGCCaCGCg -3'
miRNA:   3'- cGGCGCGGCG-------------GCgCCGUcGCUGG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 99085 0.66 0.470739
Target:  5'- gGuuGCGacggucCCGCCGCGGgGGCG-CCgaggagggaggggCGCg -3'
miRNA:   3'- -CggCGC------GGCGGCGCCgUCGCuGG-------------GCG- -5'
29523 5' -66.2 NC_006151.1 + 23643 0.66 0.468995
Target:  5'- gGCaCGCGCUGCgcgcucugCGCgacacggucgagcaGGCGGCGGaCCGCu -3'
miRNA:   3'- -CG-GCGCGGCG--------GCG--------------CCGUCGCUgGGCG- -5'
29523 5' -66.2 NC_006151.1 + 35384 0.66 0.466386
Target:  5'- aCCGCccccccuccaccauCCGCCGCGaCcGCGGCCgCGCa -3'
miRNA:   3'- cGGCGc-------------GGCGGCGCcGuCGCUGG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 86167 0.66 0.462918
Target:  5'- uCCaGCGCgGCCuugGCGGC-GCGGCcgaagCCGCu -3'
miRNA:   3'- cGG-CGCGgCGG---CGCCGuCGCUG-----GGCG- -5'
29523 5' -66.2 NC_006151.1 + 75100 0.66 0.462918
Target:  5'- aGCCGCcaggcggcaaaGUCcuccgucaggGCCGCGGCcaccuccauGGCGcgcGCCCGCc -3'
miRNA:   3'- -CGGCG-----------CGG----------CGGCGCCG---------UCGC---UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 39168 0.66 0.462918
Target:  5'- uGCagGCGCUGCaGCGGCugacGUGGCUCGa -3'
miRNA:   3'- -CGg-CGCGGCGgCGCCGu---CGCUGGGCg -5'
29523 5' -66.2 NC_006151.1 + 37922 0.66 0.462918
Target:  5'- aUCGgGCCcgaGCUGCGGCAcGaCGcCCUGCg -3'
miRNA:   3'- cGGCgCGG---CGGCGCCGU-C-GCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 36027 0.66 0.462918
Target:  5'- uUgGCGCCaacCCGUGGCuG-GACCUGCu -3'
miRNA:   3'- cGgCGCGGc--GGCGCCGuCgCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 19344 0.66 0.462918
Target:  5'- uGCC-CGCCGCCGUccggcuccacGGUGGUGcggcuggaGCCCGa -3'
miRNA:   3'- -CGGcGCGGCGGCG----------CCGUCGC--------UGGGCg -5'
29523 5' -66.2 NC_006151.1 + 8427 0.66 0.462918
Target:  5'- gGCCGCGUCGUccuCGgGGCGGUccCCCu- -3'
miRNA:   3'- -CGGCGCGGCG---GCgCCGUCGcuGGGcg -5'
29523 5' -66.2 NC_006151.1 + 3262 0.66 0.462918
Target:  5'- aUCGUgGCCaCCGCGGgGGCgGugCUGCa -3'
miRNA:   3'- cGGCG-CGGcGGCGCCgUCG-CugGGCG- -5'
29523 5' -66.2 NC_006151.1 + 29148 0.66 0.462918
Target:  5'- -aCGUGCUG-CGCGaCGGgGGCCUGCg -3'
miRNA:   3'- cgGCGCGGCgGCGCcGUCgCUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.