miRNA display CGI


Results 41 - 60 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 5' -66.2 NC_006151.1 + 7629 0.66 0.489241
Target:  5'- -gCGCGCCGCCcCGGCGucaCGuuCUGCc -3'
miRNA:   3'- cgGCGCGGCGGcGCCGUc--GCugGGCG- -5'
29523 5' -66.2 NC_006151.1 + 100808 0.66 0.489241
Target:  5'- gGCCGgGCaucccCGCCGCGGgGaugugugcguGCGAgCCGg -3'
miRNA:   3'- -CGGCgCG-----GCGGCGCCgU----------CGCUgGGCg -5'
29523 5' -66.2 NC_006151.1 + 68182 0.66 0.489241
Target:  5'- cGCaGCGCCGCCaGC-GUGGCGuCCaCGUc -3'
miRNA:   3'- -CGgCGCGGCGG-CGcCGUCGCuGG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 62890 0.66 0.489241
Target:  5'- cGCCGUcuCC-CCGaCGGaCGGCG-CCCGUg -3'
miRNA:   3'- -CGGCGc-GGcGGC-GCC-GUCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 79236 0.66 0.489241
Target:  5'- cGCCucgGCGUacaggGCCGCgacGGCGGCGcggGCCaCGCu -3'
miRNA:   3'- -CGG---CGCGg----CGGCG---CCGUCGC---UGG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 124180 0.66 0.488352
Target:  5'- cGCgGgGCCcaccgggGCCaGCGGCgcgGGCGGCCgGUc -3'
miRNA:   3'- -CGgCgCGG-------CGG-CGCCG---UCGCUGGgCG- -5'
29523 5' -66.2 NC_006151.1 + 45151 0.66 0.483919
Target:  5'- aGUCGCGCauCcuggaguucuucaugGCCGCgGGCcGCGagacGCCCGCg -3'
miRNA:   3'- -CGGCGCG--G---------------CGGCG-CCGuCGC----UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 82273 0.66 0.479506
Target:  5'- gGCCGCcagCGCCGCGgagagccauuucaGCAGCGccgucgucuuGCCCGa -3'
miRNA:   3'- -CGGCGcg-GCGGCGC-------------CGUCGC----------UGGGCg -5'
29523 5' -66.2 NC_006151.1 + 75920 0.66 0.479506
Target:  5'- aGCCgGCGUCGUugaccaccaCGUGGCgcccgcgGGCGuccaGCCCGCc -3'
miRNA:   3'- -CGG-CGCGGCG---------GCGCCG-------UCGC----UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 42287 0.66 0.479506
Target:  5'- gGCCGCccugacgGCCgacGCCGUGGaC-GCGuGCCUGCg -3'
miRNA:   3'- -CGGCG-------CGG---CGGCGCC-GuCGC-UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 13582 0.66 0.480387
Target:  5'- -gCGCGCCGCCGCcaccucGGUcgcguucagcacGGCGuACUCGg -3'
miRNA:   3'- cgGCGCGGCGGCG------CCG------------UCGC-UGGGCg -5'
29523 5' -66.2 NC_006151.1 + 128186 0.66 0.480387
Target:  5'- aGCagaGCGCC-CCGCuGcGCAGCG-CgCUGCg -3'
miRNA:   3'- -CGg--CGCGGcGGCG-C-CGUCGCuG-GGCG- -5'
29523 5' -66.2 NC_006151.1 + 68682 0.66 0.480387
Target:  5'- aGCCGCGCgaGCgCGCagaaGguGCG-CUCGCu -3'
miRNA:   3'- -CGGCGCGg-CG-GCGc---CguCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 57800 0.66 0.480387
Target:  5'- cUCGCGCaGCgGCGaCGGCaACCUGCg -3'
miRNA:   3'- cGGCGCGgCGgCGCcGUCGcUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 40794 0.66 0.480387
Target:  5'- cGCCaacuuugaCGCCGUggaCGCGGgGGCG-CCCGg -3'
miRNA:   3'- -CGGc-------GCGGCG---GCGCCgUCGCuGGGCg -5'
29523 5' -66.2 NC_006151.1 + 30097 0.66 0.480387
Target:  5'- gGCCGCaaCCGCaCGCacGGCgAGUG-CCUGCu -3'
miRNA:   3'- -CGGCGc-GGCG-GCG--CCG-UCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 141642 0.66 0.480387
Target:  5'- cGCCggggaggcaaGCGCCGCCG-GGCcgaGGgGACCgaggcCGCc -3'
miRNA:   3'- -CGG----------CGCGGCGGCgCCG---UCgCUGG-----GCG- -5'
29523 5' -66.2 NC_006151.1 + 88970 0.66 0.480387
Target:  5'- cGCUGCagaugGCCcuccuggacuuuGUgCGCGGCAucGCGGCCUGCu -3'
miRNA:   3'- -CGGCG-----CGG------------CG-GCGCCGU--CGCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 70059 0.66 0.480387
Target:  5'- cGCCGCGUa--CGCGGCcGUGAagcCCaCGCc -3'
miRNA:   3'- -CGGCGCGgcgGCGCCGuCGCU---GG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 11681 0.66 0.480387
Target:  5'- gGCCgcggGCGCCGCCGuCGuCAGCGcGCCa-- -3'
miRNA:   3'- -CGG----CGCGGCGGC-GCcGUCGC-UGGgcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.