miRNA display CGI


Results 41 - 60 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 5' -66.2 NC_006151.1 + 60626 0.79 0.064748
Target:  5'- cGCCGcCGUCGUCGgGGCGGggcuccCGGCCCGCg -3'
miRNA:   3'- -CGGC-GCGGCGGCgCCGUC------GCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 69122 0.79 0.06639
Target:  5'- cGCCGCGCCuCCGCgGGCAG-GGCgCGCg -3'
miRNA:   3'- -CGGCGCGGcGGCG-CCGUCgCUGgGCG- -5'
29523 5' -66.2 NC_006151.1 + 84757 0.79 0.068072
Target:  5'- gGCgCGCGCCGCCGaggaGGCGgacGCGGCgCGCg -3'
miRNA:   3'- -CG-GCGCGGCGGCg---CCGU---CGCUGgGCG- -5'
29523 5' -66.2 NC_006151.1 + 136419 0.79 0.069795
Target:  5'- cGCgGgGCC-CCGCGGCGGCGcACgCCGCg -3'
miRNA:   3'- -CGgCgCGGcGGCGCCGUCGC-UG-GGCG- -5'
29523 5' -66.2 NC_006151.1 + 122672 0.79 0.069795
Target:  5'- cGCCGCGCCGaggugcgCGCGGCGGCcguggaGCUCGCg -3'
miRNA:   3'- -CGGCGCGGCg------GCGCCGUCGc-----UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 86186 0.78 0.07156
Target:  5'- cGCCGCGCUGCCccCGGCGG--GCCCGCu -3'
miRNA:   3'- -CGGCGCGGCGGc-GCCGUCgcUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 31019 0.78 0.07522
Target:  5'- --gGuCGCCGCCGCGGCccucGCGGCCCGg -3'
miRNA:   3'- cggC-GCGGCGGCGCCGu---CGCUGGGCg -5'
29523 5' -66.2 NC_006151.1 + 55878 0.78 0.07522
Target:  5'- cGCgGCGCUGUCGCGGCggacgugcgccgGGCGACCgaGCg -3'
miRNA:   3'- -CGgCGCGGCGGCGCCG------------UCGCUGGg-CG- -5'
29523 5' -66.2 NC_006151.1 + 36571 0.78 0.07522
Target:  5'- gGCCgcaGCGCCGgCaCGGCGGgGGCCCGCu -3'
miRNA:   3'- -CGG---CGCGGCgGcGCCGUCgCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 130729 0.78 0.07522
Target:  5'- cCCGCGCgGCCGCGGCgcAGCGccACCCa- -3'
miRNA:   3'- cGGCGCGgCGGCGCCG--UCGC--UGGGcg -5'
29523 5' -66.2 NC_006151.1 + 40034 0.78 0.075973
Target:  5'- uCCGCGCCGCCGCcgggGGCGccguggagacccacCGGCCCGCg -3'
miRNA:   3'- cGGCGCGGCGGCG----CCGUc-------------GCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 64519 0.78 0.077117
Target:  5'- cGCCGCcaaagGCCGCCGCGGCcgcgucgggGGCGGCgaggCCGUg -3'
miRNA:   3'- -CGGCG-----CGGCGGCGCCG---------UCGCUG----GGCG- -5'
29523 5' -66.2 NC_006151.1 + 90897 0.78 0.077117
Target:  5'- cCCGCaGCCGCUGCaGCAGCGucagcaGCCCGUg -3'
miRNA:   3'- cGGCG-CGGCGGCGcCGUCGC------UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 100651 0.78 0.079059
Target:  5'- cGCCGCGCCGUCGacgaGcGCGGCGugCUGg -3'
miRNA:   3'- -CGGCGCGGCGGCg---C-CGUCGCugGGCg -5'
29523 5' -66.2 NC_006151.1 + 4790 0.78 0.079059
Target:  5'- cCCG-GCCGCggCGCGGUAGCGGgCCGCg -3'
miRNA:   3'- cGGCgCGGCG--GCGCCGUCGCUgGGCG- -5'
29523 5' -66.2 NC_006151.1 + 62042 0.78 0.079059
Target:  5'- cGCUGCGCCG-CGUGGCGGUGcACgCGCg -3'
miRNA:   3'- -CGGCGCGGCgGCGCCGUCGC-UGgGCG- -5'
29523 5' -66.2 NC_006151.1 + 2482 0.78 0.079059
Target:  5'- gGCCGCGCggUGCCcgaaGGCGGCG-CCCGCg -3'
miRNA:   3'- -CGGCGCG--GCGGcg--CCGUCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 134812 0.78 0.081048
Target:  5'- cCCGCGCCGgacCCGgaCGGUGGCGACCgCGCg -3'
miRNA:   3'- cGGCGCGGC---GGC--GCCGUCGCUGG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 102391 0.78 0.081048
Target:  5'- aGCUgGCGCUgGUCGCGGCGcgcgucgcGCGGCCCGCg -3'
miRNA:   3'- -CGG-CGCGG-CGGCGCCGU--------CGCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 72047 0.78 0.081048
Target:  5'- cGCCGCGCagCGUCuCGGCGGCGcgcgccaccACCCGCg -3'
miRNA:   3'- -CGGCGCG--GCGGcGCCGUCGC---------UGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.