miRNA display CGI


Results 21 - 40 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 5' -66.2 NC_006151.1 + 38294 0.81 0.045504
Target:  5'- cGCCGagGCCGCCGC-GCGGCccgGGCCCGCg -3'
miRNA:   3'- -CGGCg-CGGCGGCGcCGUCG---CUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 103806 0.81 0.046553
Target:  5'- gGCCGCGCUgucggcgGCCGUGGCGGCGGCC-GUg -3'
miRNA:   3'- -CGGCGCGG-------CGGCGCCGUCGCUGGgCG- -5'
29523 5' -66.2 NC_006151.1 + 37172 0.81 0.046671
Target:  5'- cGCCgGCGcCCGCCGCGGCcccGCGGCCCu- -3'
miRNA:   3'- -CGG-CGC-GGCGGCGCCGu--CGCUGGGcg -5'
29523 5' -66.2 NC_006151.1 + 104258 0.81 0.047866
Target:  5'- uGCCcgagaaCGCCGgCGCGGCGGCGgGCCCGCc -3'
miRNA:   3'- -CGGc-----GCGGCgGCGCCGUCGC-UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 97920 0.81 0.049091
Target:  5'- uGCCGuCGCCGCCGaGGCcGCG-CCCGCc -3'
miRNA:   3'- -CGGC-GCGGCGGCgCCGuCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 105205 0.8 0.052819
Target:  5'- cGCUGCGCCaggaggcggacacGCUGCGGCAGCGGCugacggCCGCc -3'
miRNA:   3'- -CGGCGCGG-------------CGGCGCCGUCGCUG------GGCG- -5'
29523 5' -66.2 NC_006151.1 + 87443 0.8 0.052953
Target:  5'- cCCGcCGCCGCCGCGGCcGCc-CCCGCu -3'
miRNA:   3'- cGGC-GCGGCGGCGCCGuCGcuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 50836 0.8 0.052953
Target:  5'- cCCGCGCCGCCGUccccucGGCGGCcgcccuCCCGCg -3'
miRNA:   3'- cGGCGCGGCGGCG------CCGUCGcu----GGGCG- -5'
29523 5' -66.2 NC_006151.1 + 57083 0.8 0.054304
Target:  5'- cGCCGCGCaggcgcacgcagCGCCGCGaGCAGCGcGCgCCGCc -3'
miRNA:   3'- -CGGCGCG------------GCGGCGC-CGUCGC-UG-GGCG- -5'
29523 5' -66.2 NC_006151.1 + 72342 0.8 0.05569
Target:  5'- gGCCGCgagcacgucGCCGCCGCagGGCAgcGCGACCuCGCg -3'
miRNA:   3'- -CGGCG---------CGGCGGCG--CCGU--CGCUGG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 49999 0.8 0.05569
Target:  5'- uCCGCGUuugcgCGCCGCGcGC-GCGGCCCGCg -3'
miRNA:   3'- cGGCGCG-----GCGGCGC-CGuCGCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 107899 0.8 0.057109
Target:  5'- aGCCGC-CCGCCGCGGCcaAGCcGACCCc- -3'
miRNA:   3'- -CGGCGcGGCGGCGCCG--UCG-CUGGGcg -5'
29523 5' -66.2 NC_006151.1 + 85622 0.79 0.059903
Target:  5'- -aCGCGCCGCCGcCGcGCGGCGccagcggggacgcGCCCGCc -3'
miRNA:   3'- cgGCGCGGCGGC-GC-CGUCGC-------------UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 102870 0.79 0.060054
Target:  5'- uCCGCGUggccaaCGCCGCGGUGGCGgGCCUGCg -3'
miRNA:   3'- cGGCGCG------GCGGCGCCGUCGC-UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 37393 0.79 0.060054
Target:  5'- gGCCGCGuCCGCUaCGGCGGCGccggggacuCCCGCg -3'
miRNA:   3'- -CGGCGC-GGCGGcGCCGUCGCu--------GGGCG- -5'
29523 5' -66.2 NC_006151.1 + 36911 0.79 0.062202
Target:  5'- cGCCGCGCCggagaggcgcccuccGCCGCGGCcGCGGCUucaGCa -3'
miRNA:   3'- -CGGCGCGG---------------CGGCGCCGuCGCUGGg--CG- -5'
29523 5' -66.2 NC_006151.1 + 81387 0.79 0.062202
Target:  5'- aGCCGCGCCGCgGCgcccagguuggccagGGUGGCGucCCCGCc -3'
miRNA:   3'- -CGGCGCGGCGgCG---------------CCGUCGCu-GGGCG- -5'
29523 5' -66.2 NC_006151.1 + 39154 0.79 0.063145
Target:  5'- cCCGCGCCGCgGCGGCcucucGGCGcuGCUCGCc -3'
miRNA:   3'- cGGCGCGGCGgCGCCG-----UCGC--UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 50361 0.79 0.063145
Target:  5'- cGCCGCGucuCCGCCgGCGGgGGCGAgacgcgggcCCCGCg -3'
miRNA:   3'- -CGGCGC---GGCGG-CGCCgUCGCU---------GGGCG- -5'
29523 5' -66.2 NC_006151.1 + 86084 0.79 0.064748
Target:  5'- cGCgCGCGCCGCCGCcGCcauGgGGCCCGUg -3'
miRNA:   3'- -CG-GCGCGGCGGCGcCGu--CgCUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.