miRNA display CGI


Results 21 - 40 of 805 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 5' -66.2 NC_006151.1 + 5230 0.69 0.290015
Target:  5'- gGCgCGCGCaCGaguaCGCgGGC-GCGACCgCGCa -3'
miRNA:   3'- -CG-GCGCG-GCg---GCG-CCGuCGCUGG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 5240 0.87 0.016383
Target:  5'- cGCCGCGCgGCgGCGGCGGgGGCCCGg -3'
miRNA:   3'- -CGGCGCGgCGgCGCCGUCgCUGGGCg -5'
29523 5' -66.2 NC_006151.1 + 5274 0.71 0.237584
Target:  5'- gGCCaugGCGCCcguGCUGCGGCAccuCGACgCGCa -3'
miRNA:   3'- -CGG---CGCGG---CGGCGCCGUc--GCUGgGCG- -5'
29523 5' -66.2 NC_006151.1 + 5331 0.73 0.171988
Target:  5'- aGCCGCgGCCGCgGCGGagGGCG-CCCu- -3'
miRNA:   3'- -CGGCG-CGGCGgCGCCg-UCGCuGGGcg -5'
29523 5' -66.2 NC_006151.1 + 5364 0.75 0.126067
Target:  5'- cGCgGCGCCGgcggggcugucuCUGCGGgGGCGcCCCGCc -3'
miRNA:   3'- -CGgCGCGGC------------GGCGCCgUCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 5462 0.67 0.404579
Target:  5'- cGCCcgGCGCaCGCCGUcacGC-GCGugCUGCa -3'
miRNA:   3'- -CGG--CGCG-GCGGCGc--CGuCGCugGGCG- -5'
29523 5' -66.2 NC_006151.1 + 5509 0.71 0.232275
Target:  5'- -aCGCGCCcCCG-GGCuucGaCGACCCGCg -3'
miRNA:   3'- cgGCGCGGcGGCgCCGu--C-GCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 5531 0.76 0.111639
Target:  5'- gGCCGaggaucgaGCCGCCucGCGGCGGCGgGCUCGUc -3'
miRNA:   3'- -CGGCg-------CGGCGG--CGCCGUCGC-UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 5628 0.74 0.145655
Target:  5'- cGCCGcCGCCGCCG-GGCGccgagacCGGCCCGg -3'
miRNA:   3'- -CGGC-GCGGCGGCgCCGUc------GCUGGGCg -5'
29523 5' -66.2 NC_006151.1 + 5690 0.74 0.138835
Target:  5'- cGCCGUGCCGgCGCuGCGGCca-CCGCu -3'
miRNA:   3'- -CGGCGCGGCgGCGcCGUCGcugGGCG- -5'
29523 5' -66.2 NC_006151.1 + 5747 0.72 0.18888
Target:  5'- gGCCGCGCCGCCGgcccgGGCucacCGACCgGg -3'
miRNA:   3'- -CGGCGCGGCGGCg----CCGuc--GCUGGgCg -5'
29523 5' -66.2 NC_006151.1 + 5899 0.73 0.167585
Target:  5'- uGCCGCugcgaguGCUGCCGgGGuCGGCGGCCgGg -3'
miRNA:   3'- -CGGCG-------CGGCGGCgCC-GUCGCUGGgCg -5'
29523 5' -66.2 NC_006151.1 + 5945 0.66 0.488352
Target:  5'- cGCCGCGCCGggcgacgaggaCUG-GGCggacugggacgcgGGCGucCCCGCc -3'
miRNA:   3'- -CGGCGCGGC-----------GGCgCCG-------------UCGCu-GGGCG- -5'
29523 5' -66.2 NC_006151.1 + 6044 0.72 0.212032
Target:  5'- cGCCcuCGCCGCCGCcGCGGgG-UCCGCc -3'
miRNA:   3'- -CGGc-GCGGCGGCGcCGUCgCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 6158 0.66 0.471612
Target:  5'- -gCGCGgguuCCGCCGCGcGguGCucGACgCGCu -3'
miRNA:   3'- cgGCGC----GGCGGCGC-CguCG--CUGgGCG- -5'
29523 5' -66.2 NC_006151.1 + 6266 0.73 0.167585
Target:  5'- gGCCGgacgcgaUGCCcucuuccucgGCCGCGGCGGCGGCC-GCc -3'
miRNA:   3'- -CGGC-------GCGG----------CGGCGCCGUCGCUGGgCG- -5'
29523 5' -66.2 NC_006151.1 + 6336 0.68 0.34388
Target:  5'- gGCgCGCGaCGgCGCGGC-GCGACgCgGCg -3'
miRNA:   3'- -CG-GCGCgGCgGCGCCGuCGCUG-GgCG- -5'
29523 5' -66.2 NC_006151.1 + 6825 0.66 0.445789
Target:  5'- cCCGCGgCGcCCGUGG-GGCG-CUCGCc -3'
miRNA:   3'- cGGCGCgGC-GGCGCCgUCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 7209 0.67 0.384121
Target:  5'- -aCGCGCCuccaccucuuccacCCGCGGcCGGCcuacGACCUGCg -3'
miRNA:   3'- cgGCGCGGc-------------GGCGCC-GUCG----CUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 7370 0.68 0.361384
Target:  5'- cGCUGCGCuccaucgcggucgggCGCCGCGG--GCuGACCuCGCu -3'
miRNA:   3'- -CGGCGCG---------------GCGGCGCCguCG-CUGG-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.