miRNA display CGI


Results 21 - 40 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 5' -66.2 NC_006151.1 + 139551 0.67 0.412629
Target:  5'- gGCCGgGCUGCUcgggccagaGCGGgGGCaGGCCgggCGCg -3'
miRNA:   3'- -CGGCgCGGCGG---------CGCCgUCG-CUGG---GCG- -5'
29523 5' -66.2 NC_006151.1 + 139507 0.69 0.32287
Target:  5'- uCCGCggGCCcggGCCGC-GCGGCGGCCUcgGCg -3'
miRNA:   3'- cGGCG--CGG---CGGCGcCGUCGCUGGG--CG- -5'
29523 5' -66.2 NC_006151.1 + 139338 0.67 0.381035
Target:  5'- gGCC-UGCCGCCGCucGGCcgGGCcGGCCC-Cg -3'
miRNA:   3'- -CGGcGCGGCGGCG--CCG--UCG-CUGGGcG- -5'
29523 5' -66.2 NC_006151.1 + 139304 0.67 0.396629
Target:  5'- aUCGCGUCGCggagCGCGaGCAGCGcGgCCGUc -3'
miRNA:   3'- cGGCGCGGCG----GCGC-CGUCGC-UgGGCG- -5'
29523 5' -66.2 NC_006151.1 + 139287 0.75 0.114395
Target:  5'- -aCGCGCCGCCcucggcgucuGCGGC-GCGugCUGCu -3'
miRNA:   3'- cgGCGCGGCGG----------CGCCGuCGCugGGCG- -5'
29523 5' -66.2 NC_006151.1 + 139199 0.66 0.444096
Target:  5'- aGCagGCGCucgaggaCGCCGCGGCaggccaggacgcaGGCG-UCCGCc -3'
miRNA:   3'- -CGg-CGCG-------GCGGCGCCG-------------UCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 139077 0.7 0.248506
Target:  5'- cGCCuccccgGCGCgGggguCCGCGGC-GCGGCCCGg -3'
miRNA:   3'- -CGG------CGCGgC----GGCGCCGuCGCUGGGCg -5'
29523 5' -66.2 NC_006151.1 + 138988 0.73 0.167981
Target:  5'- cGCCGCGCCG-CGCucaGCcGCGACcuCCGCg -3'
miRNA:   3'- -CGGCGCGGCgGCGc--CGuCGCUG--GGCG- -5'
29523 5' -66.2 NC_006151.1 + 138604 0.73 0.180259
Target:  5'- cGCgGCGCUGCCGCucGGCgAG-GACgCCGCc -3'
miRNA:   3'- -CGgCGCGGCGGCG--CCG-UCgCUG-GGCG- -5'
29523 5' -66.2 NC_006151.1 + 138600 0.67 0.42902
Target:  5'- cCCgGCGCCGCCGUaGCGgacGCGGCCg-- -3'
miRNA:   3'- cGG-CGCGGCGGCGcCGU---CGCUGGgcg -5'
29523 5' -66.2 NC_006151.1 + 138098 0.72 0.212032
Target:  5'- cGCCcgGCGCaCGCCGCuGGCGgacaugcugcGCGGCCUGg -3'
miRNA:   3'- -CGG--CGCG-GCGGCG-CCGU----------CGCUGGGCg -5'
29523 5' -66.2 NC_006151.1 + 137725 0.73 0.167981
Target:  5'- uGCCGuCGCCGUaCGCGGUGGCcGGCgCCGa -3'
miRNA:   3'- -CGGC-GCGGCG-GCGCCGUCG-CUG-GGCg -5'
29523 5' -66.2 NC_006151.1 + 137648 0.72 0.197862
Target:  5'- uCCGCGCCcCCGUcccGGCGGaCGagcGCCCGCc -3'
miRNA:   3'- cGGCGCGGcGGCG---CCGUC-GC---UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 137371 0.68 0.372635
Target:  5'- gGCUGCuGCUGCUGCugGGCcgaaggaggacggGGCGGCCuCGUg -3'
miRNA:   3'- -CGGCG-CGGCGGCG--CCG-------------UCGCUGG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 137321 0.68 0.336769
Target:  5'- gGCCGCgGCCGCga-GGaCGGCGGCCUcgGCc -3'
miRNA:   3'- -CGGCG-CGGCGgcgCC-GUCGCUGGG--CG- -5'
29523 5' -66.2 NC_006151.1 + 137163 0.74 0.142207
Target:  5'- gGCCGCGCacgaGCCgGCGGCGcagauguacGUGAgCCGCc -3'
miRNA:   3'- -CGGCGCGg---CGG-CGCCGU---------CGCUgGGCG- -5'
29523 5' -66.2 NC_006151.1 + 137065 0.68 0.373393
Target:  5'- gGCCggGCGCCGagCGCGGagAGCGGgCgGCg -3'
miRNA:   3'- -CGG--CGCGGCg-GCGCCg-UCGCUgGgCG- -5'
29523 5' -66.2 NC_006151.1 + 136963 0.77 0.09173
Target:  5'- cGCCGCcugcuggagcugGCCGCCGCgccgGGCGGCGGgCgCGCg -3'
miRNA:   3'- -CGGCG------------CGGCGGCG----CCGUCGCUgG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 136864 0.72 0.184525
Target:  5'- cGCCGCGugaCCGCCGuCGaGgAGCGcCUCGCg -3'
miRNA:   3'- -CGGCGC---GGCGGC-GC-CgUCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 136823 0.72 0.197405
Target:  5'- -aCGCGCCGCgcgggcucugcgaCGCGGCcGcCGGCCuCGCg -3'
miRNA:   3'- cgGCGCGGCG-------------GCGCCGuC-GCUGG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.