miRNA display CGI


Results 1 - 20 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 5' -66.2 NC_006151.1 + 142985 0.72 0.206738
Target:  5'- uGCCGCGggugggcCCGaCCGCaGCAucGCGGCUCGCc -3'
miRNA:   3'- -CGGCGC-------GGC-GGCGcCGU--CGCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 142816 0.68 0.373393
Target:  5'- cGCCggcuuccgggGCGCgGCCGgGGCGG-GcUCCGCg -3'
miRNA:   3'- -CGG----------CGCGgCGGCgCCGUCgCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 141782 0.71 0.227067
Target:  5'- cGCCGCcgagcccuCCGCCGCGGCcGCcGCcgCCGCu -3'
miRNA:   3'- -CGGCGc-------GGCGGCGCCGuCGcUG--GGCG- -5'
29523 5' -66.2 NC_006151.1 + 141642 0.66 0.480387
Target:  5'- cGCCggggaggcaaGCGCCGCCG-GGCcgaGGgGACCgaggcCGCc -3'
miRNA:   3'- -CGG----------CGCGGCGGCgCCG---UCgCUGG-----GCG- -5'
29523 5' -66.2 NC_006151.1 + 141640 0.83 0.032706
Target:  5'- uGCCGCGgCGgCGCGGCGGgGcCCCGCg -3'
miRNA:   3'- -CGGCGCgGCgGCGCCGUCgCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 141457 0.68 0.336769
Target:  5'- gGCCGgGCCGa---GGgGGCGcCCCGCu -3'
miRNA:   3'- -CGGCgCGGCggcgCCgUCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 141338 0.71 0.226551
Target:  5'- gGCCGuCGCCGCCGCGGaCGccGaCGAucuccacagagucCCCGUc -3'
miRNA:   3'- -CGGC-GCGGCGGCGCC-GU--C-GCU-------------GGGCG- -5'
29523 5' -66.2 NC_006151.1 + 141240 0.68 0.373393
Target:  5'- aCgGCGCC-CC-CGGCGGCGGCgCGg -3'
miRNA:   3'- cGgCGCGGcGGcGCCGUCGCUGgGCg -5'
29523 5' -66.2 NC_006151.1 + 141181 0.71 0.232275
Target:  5'- gGCCgGCGgggCGcCCGCGGCGGCGacggcGCCCGg -3'
miRNA:   3'- -CGG-CGCg--GC-GGCGCCGUCGC-----UGGGCg -5'
29523 5' -66.2 NC_006151.1 + 141103 0.67 0.388781
Target:  5'- cGCCGCGgCGCagaagGCGcGCAacuCGGCCgGCa -3'
miRNA:   3'- -CGGCGCgGCGg----CGC-CGUc--GCUGGgCG- -5'
29523 5' -66.2 NC_006151.1 + 140877 0.71 0.234387
Target:  5'- aGCaCGCGCuggcgguaggcgCGCgGCGGCAGCGggaccgggguccgggGCCCGg -3'
miRNA:   3'- -CG-GCGCG------------GCGgCGCCGUCGC---------------UGGGCg -5'
29523 5' -66.2 NC_006151.1 + 140686 0.69 0.329766
Target:  5'- gGCCGCGCggaGCuCGCGGCAcccgGGCCagCGCa -3'
miRNA:   3'- -CGGCGCGg--CG-GCGCCGUcg--CUGG--GCG- -5'
29523 5' -66.2 NC_006151.1 + 140230 0.66 0.437359
Target:  5'- uGCCGCauccaGgCGgCGCGGCGGCGGa--GCg -3'
miRNA:   3'- -CGGCG-----CgGCgGCGCCGUCGCUgggCG- -5'
29523 5' -66.2 NC_006151.1 + 140037 0.67 0.404579
Target:  5'- cGCCG-GCCGggaCGCGGCGGa-AgCCGCc -3'
miRNA:   3'- -CGGCgCGGCg--GCGCCGUCgcUgGGCG- -5'
29523 5' -66.2 NC_006151.1 + 139851 0.67 0.381035
Target:  5'- cGUCGCgGUgGCCGUGGCcGUc-CCCGCg -3'
miRNA:   3'- -CGGCG-CGgCGGCGCCGuCGcuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 139806 0.77 0.089271
Target:  5'- cGCgCGCGCCGCCGUcuccgcgacGCAcgcgcgggucggcGCGACCCGCg -3'
miRNA:   3'- -CG-GCGCGGCGGCGc--------CGU-------------CGCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 139791 0.68 0.351098
Target:  5'- cGCCGU-CC-CCGgGGCGGCGGgcCCCGg -3'
miRNA:   3'- -CGGCGcGGcGGCgCCGUCGCU--GGGCg -5'
29523 5' -66.2 NC_006151.1 + 139664 0.77 0.09173
Target:  5'- gGgCGCGCCGCCcgacaggcccuGCGGCAGCGGCggCgGCa -3'
miRNA:   3'- -CgGCGCGGCGG-----------CGCCGUCGCUG--GgCG- -5'
29523 5' -66.2 NC_006151.1 + 139589 0.76 0.108945
Target:  5'- gGCuCGCGCCcCCcCGaGCGGCGGCCCGUc -3'
miRNA:   3'- -CG-GCGCGGcGGcGC-CGUCGCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 139587 0.7 0.248506
Target:  5'- cGCC-CGCCGCCGcCGGCGcCGGCgCUGg -3'
miRNA:   3'- -CGGcGCGGCGGC-GCCGUcGCUG-GGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.