miRNA display CGI


Results 41 - 60 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 3381 0.66 0.672511
Target:  5'- gUAGGCGGCgagggccgccucgGAgggccgcGGCGUGUGGGuCUCGCc -3'
miRNA:   3'- -GUCCGUCGa------------CU-------UCGCGCGCCU-GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 69180 0.66 0.671518
Target:  5'- -cGGCgAGCac--GCGCGCcaggggcucgcuccgGGGCCCGCg -3'
miRNA:   3'- guCCG-UCGacuuCGCGCG---------------CCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 5840 0.66 0.667542
Target:  5'- gAGGCcggggaGGCUGcggagggggacGAGCGCcCGGGgCCGCc -3'
miRNA:   3'- gUCCG------UCGAC-----------UUCGCGcGCCUgGGCG- -5'
29526 3' -60.8 NC_006151.1 + 54419 0.66 0.667542
Target:  5'- gAGGC-GCUGgcGCgGCGCuucggcgacgaGGcGCCCGCc -3'
miRNA:   3'- gUCCGuCGACuuCG-CGCG-----------CC-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 57709 0.66 0.667542
Target:  5'- aAGGCcacgagcgccGGCUuGAcCGCGCGcGCCCGCa -3'
miRNA:   3'- gUCCG----------UCGAcUUcGCGCGCcUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 112035 0.66 0.667542
Target:  5'- -cGGgAGCUGGggccGGCGgGCGGGCggCgGCg -3'
miRNA:   3'- guCCgUCGACU----UCGCgCGCCUG--GgCG- -5'
29526 3' -60.8 NC_006151.1 + 112805 0.66 0.667542
Target:  5'- gCGGGCGcgcgucGCUGcAGCGCGCcuucGCCaCGCg -3'
miRNA:   3'- -GUCCGU------CGACuUCGCGCGcc--UGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 27196 0.66 0.667542
Target:  5'- gGGGCcGCgcaGAAgGCGcCGgGGcCCCGCg -3'
miRNA:   3'- gUCCGuCGa--CUU-CGC-GCgCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 90742 0.66 0.667542
Target:  5'- -cGGCGGCgcccucgGggGCG-GCGGGCaCgGUg -3'
miRNA:   3'- guCCGUCGa------CuuCGCgCGCCUG-GgCG- -5'
29526 3' -60.8 NC_006151.1 + 106370 0.66 0.667542
Target:  5'- gCGGGCGcGCgcccGC-CGCGGcGCCCGCu -3'
miRNA:   3'- -GUCCGU-CGacuuCGcGCGCC-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 115568 0.66 0.667542
Target:  5'- gCGGGCG-----GGCGCGCGGGCagguCGCg -3'
miRNA:   3'- -GUCCGUcgacuUCGCGCGCCUGg---GCG- -5'
29526 3' -60.8 NC_006151.1 + 139550 0.66 0.667542
Target:  5'- uCGGGgAGCgagGAgcGGCGCcCGG-UCCGCg -3'
miRNA:   3'- -GUCCgUCGa--CU--UCGCGcGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 10470 0.66 0.667542
Target:  5'- -cGGCGGCggugaagGAggagagccgcccGGCGCGC--GCCCGCc -3'
miRNA:   3'- guCCGUCGa------CU------------UCGCGCGccUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 130783 0.66 0.665553
Target:  5'- uCGGGCaugucgcgcguccAGCUGGcguacgcGGCGUcCGGGuCCCGCu -3'
miRNA:   3'- -GUCCG-------------UCGACU-------UCGCGcGCCU-GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 2475 0.66 0.664557
Target:  5'- --aGCGGUUGGc-CGCGCGGugcccgaaggcggcGCCCGCg -3'
miRNA:   3'- gucCGUCGACUucGCGCGCC--------------UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 119339 0.66 0.664557
Target:  5'- cCGGGCAaccacgacuucGCcauggaccaccuggUGAuGGCGUGCGGcuucuGCCCGCa -3'
miRNA:   3'- -GUCCGU-----------CG--------------ACU-UCGCGCGCC-----UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 128536 0.66 0.657585
Target:  5'- gAGGCcacGGCg--GGCccgccgGCGCGGugCCGCc -3'
miRNA:   3'- gUCCG---UCGacuUCG------CGCGCCugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 67728 0.66 0.657585
Target:  5'- aCGGcGCGGCgcacaGGcacGGCGCgGCGGcCCCGUc -3'
miRNA:   3'- -GUC-CGUCGa----CU---UCGCG-CGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 64548 0.66 0.657585
Target:  5'- gGGGCGGC-GAGGC-CGUGG-CgCGCc -3'
miRNA:   3'- gUCCGUCGaCUUCGcGCGCCuGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 123736 0.66 0.657585
Target:  5'- gAGGCGucaugcccGCUGuGGCggucuuugGCGCGGGCCC-Cg -3'
miRNA:   3'- gUCCGU--------CGACuUCG--------CGCGCCUGGGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.