miRNA display CGI


Results 21 - 40 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 5658 0.68 0.577852
Target:  5'- -cGGCGGCggggGAGGCuggggaaGCGGGCCCccGCc -3'
miRNA:   3'- guCCGUCGa---CUUCGcg-----CGCCUGGG--CG- -5'
29526 3' -60.8 NC_006151.1 + 5840 0.66 0.667542
Target:  5'- gAGGCcggggaGGCUGcggagggggacGAGCGCcCGGGgCCGCc -3'
miRNA:   3'- gUCCG------UCGAC-----------UUCGCGcGCCUgGGCG- -5'
29526 3' -60.8 NC_006151.1 + 7047 0.71 0.3932
Target:  5'- cCGGGCcaaUG-GGCGCGCGGAggcgucuCCCGCg -3'
miRNA:   3'- -GUCCGucgACuUCGCGCGCCU-------GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 7762 0.65 0.703104
Target:  5'- gGGGCGGgaGAaccGGacccgaaccucgaGCcCGGACCCGCc -3'
miRNA:   3'- gUCCGUCgaCU---UCg------------CGcGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 8005 0.75 0.229715
Target:  5'- gCGGGCGGgaGggG-GCGCGaGACCgGCu -3'
miRNA:   3'- -GUCCGUCgaCuuCgCGCGC-CUGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 8107 0.67 0.627626
Target:  5'- gGGGgAGggGggGggucggaGCGCGGAcCCCGCc -3'
miRNA:   3'- gUCCgUCgaCuuCg------CGCGCCU-GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 8299 0.66 0.647607
Target:  5'- gCGGGCGccgcgucccGCcccgagcccccGggGCGCGCGGGCCucgauCGCg -3'
miRNA:   3'- -GUCCGU---------CGa----------CuuCGCGCGCCUGG-----GCG- -5'
29526 3' -60.8 NC_006151.1 + 9624 0.71 0.369797
Target:  5'- -cGGCGGCgagggggGAAGCgggagggagagGCGCGGcgcCCCGCg -3'
miRNA:   3'- guCCGUCGa------CUUCG-----------CGCGCCu--GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 10206 0.7 0.445443
Target:  5'- gCGGGCGGCggcugcaGAGGCGgcUGCGGACgCGg -3'
miRNA:   3'- -GUCCGUCGa------CUUCGC--GCGCCUGgGCg -5'
29526 3' -60.8 NC_006151.1 + 10470 0.66 0.667542
Target:  5'- -cGGCGGCggugaagGAggagagccgcccGGCGCGC--GCCCGCc -3'
miRNA:   3'- guCCGUCGa------CU------------UCGCGCGccUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 10661 0.76 0.184854
Target:  5'- cCAGGCGGCgGggGaGCGCGGAgcgcgccgccccCCCGUg -3'
miRNA:   3'- -GUCCGUCGaCuuCgCGCGCCU------------GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 11890 0.66 0.647607
Target:  5'- uCGGGCcGCaucGAGGCGCGuCGGGguuUUCGCg -3'
miRNA:   3'- -GUCCGuCGa--CUUCGCGC-GCCU---GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 12763 0.66 0.696235
Target:  5'- aGGGCuGGCUcGAggccAGCGCGCccuuuccucucccGGcgcGCCCGCu -3'
miRNA:   3'- gUCCG-UCGA-CU----UCGCGCG-------------CC---UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 13416 0.66 0.697218
Target:  5'- gGGGgAGCcgGGccCGCGUccccgGGGCCCGCa -3'
miRNA:   3'- gUCCgUCGa-CUucGCGCG-----CCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 14129 0.7 0.453476
Target:  5'- gAGGC-GC-GGAGCGCGCcccgagccgacgaGGAgCCGCg -3'
miRNA:   3'- gUCCGuCGaCUUCGCGCG-------------CCUgGGCG- -5'
29526 3' -60.8 NC_006151.1 + 16976 0.73 0.303421
Target:  5'- cCGGcGUGGCgccaGGAGCGguUGUGGACCCGCg -3'
miRNA:   3'- -GUC-CGUCGa---CUUCGC--GCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 17091 0.68 0.555216
Target:  5'- uCAGGCGcGCgcccgucGggGCGCcgggggcuccggcgGCGGugCUGCg -3'
miRNA:   3'- -GUCCGU-CGa------CuuCGCG--------------CGCCugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 17573 0.73 0.303421
Target:  5'- aAGGCGGg-GAuGCGCcCGGACCCGUc -3'
miRNA:   3'- gUCCGUCgaCUuCGCGcGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 17707 0.68 0.548377
Target:  5'- aAGGCuGCUGugugcgcccGGGUGCGCcgGGGCCCa- -3'
miRNA:   3'- gUCCGuCGAC---------UUCGCGCG--CCUGGGcg -5'
29526 3' -60.8 NC_006151.1 + 17822 0.73 0.283429
Target:  5'- gGGcGCGGC-GggGCGgGCGGccaccACCCGCu -3'
miRNA:   3'- gUC-CGUCGaCuuCGCgCGCC-----UGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.