miRNA display CGI


Results 1 - 20 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 2475 0.66 0.664557
Target:  5'- --aGCGGUUGGc-CGCGCGGugcccgaaggcggcGCCCGCg -3'
miRNA:   3'- gucCGUCGACUucGCGCGCC--------------UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 2672 0.71 0.385835
Target:  5'- -uGGCGGCaGAGGCGCaGCGG-CUCGg -3'
miRNA:   3'- guCCGUCGaCUUCGCG-CGCCuGGGCg -5'
29526 3' -60.8 NC_006151.1 + 2740 0.66 0.694268
Target:  5'- gCAGGCcgggcccacgauggAGCUaGAguccagcacGGcCGCGCGGAgCUCGCg -3'
miRNA:   3'- -GUCCG--------------UCGA-CU---------UC-GCGCGCCU-GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 3129 0.7 0.4634
Target:  5'- cCAGGCcgGGCgcGggGCGCccucgGCGGGCUCGg -3'
miRNA:   3'- -GUCCG--UCGa-CuuCGCG-----CGCCUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 3240 0.71 0.377759
Target:  5'- cCAGGCGGCgcgGcGGCGgaGCgGGGCgCCGCg -3'
miRNA:   3'- -GUCCGUCGa--CuUCGCg-CG-CCUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 3381 0.66 0.672511
Target:  5'- gUAGGCGGCgagggccgccucgGAgggccgcGGCGUGUGGGuCUCGCc -3'
miRNA:   3'- -GUCCGUCGa------------CU-------UCGCGCGCCU-GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 3532 0.69 0.500403
Target:  5'- --aGCAGCgcgGGAGCGggguccggaGCGGGCCCGa -3'
miRNA:   3'- gucCGUCGa--CUUCGCg--------CGCCUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 3681 0.73 0.310322
Target:  5'- gGGGCGGCgGGccccgGGCGCGCGGcgcuucuucuuGCgCCGCu -3'
miRNA:   3'- gUCCGUCGaCU-----UCGCGCGCC-----------UG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 3833 0.67 0.607657
Target:  5'- -uGGCggGGCUGGAGgGCcCGGAgCCGg -3'
miRNA:   3'- guCCG--UCGACUUCgCGcGCCUgGGCg -5'
29526 3' -60.8 NC_006151.1 + 3922 0.74 0.26388
Target:  5'- uCGGGCcagAGCgGggGCaggccggGCGCGGGCuCCGCg -3'
miRNA:   3'- -GUCCG---UCGaCuuCG-------CGCGCCUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 4037 0.72 0.331738
Target:  5'- cCAGGCGGCcucgcGgGCGCGGGcCCCGUc -3'
miRNA:   3'- -GUCCGUCGacuu-CgCGCGCCU-GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 4215 0.75 0.235231
Target:  5'- aGGGCGGCcGggGCGCggGCGGGCgCGg -3'
miRNA:   3'- gUCCGUCGaCuuCGCG--CGCCUGgGCg -5'
29526 3' -60.8 NC_006151.1 + 4240 0.71 0.375358
Target:  5'- nGGGCAGCcGGAGCgggcagggcagcagGCGCucgaGGACgCCGCg -3'
miRNA:   3'- gUCCGUCGaCUUCG--------------CGCG----CCUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 4339 0.7 0.4634
Target:  5'- -cGGCGGCgaAGGCgGCGCGGACgCGg -3'
miRNA:   3'- guCCGUCGacUUCG-CGCGCCUGgGCg -5'
29526 3' -60.8 NC_006151.1 + 4606 0.76 0.194103
Target:  5'- --cGUGGCcgUGggGCGCGUGGACCCGg -3'
miRNA:   3'- gucCGUCG--ACuuCGCGCGCCUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 4635 0.7 0.454374
Target:  5'- -uGGCagaacuGGUUGAAGCGCuggucGgGGGCCUGCa -3'
miRNA:   3'- guCCG------UCGACUUCGCG-----CgCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 4705 0.66 0.647607
Target:  5'- -cGGCGGCcccgcuguagaUGAGGCGCacgaGGGCCuCGUg -3'
miRNA:   3'- guCCGUCG-----------ACUUCGCGcg--CCUGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 5063 0.68 0.567982
Target:  5'- gAGGCGGagGAGGCcgagggcCGCGGGgCCGCg -3'
miRNA:   3'- gUCCGUCgaCUUCGc------GCGCCUgGGCG- -5'
29526 3' -60.8 NC_006151.1 + 5128 0.67 0.607657
Target:  5'- gCGGGCGagUGggGCGC-CGGGCCgGa -3'
miRNA:   3'- -GUCCGUcgACuuCGCGcGCCUGGgCg -5'
29526 3' -60.8 NC_006151.1 + 5319 0.68 0.558155
Target:  5'- uGGaGCuGCUGAAGC-CGCGG--CCGCg -3'
miRNA:   3'- gUC-CGuCGACUUCGcGCGCCugGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.