miRNA display CGI


Results 1 - 20 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 30891 0.88 0.02927
Target:  5'- gAGGCGGCgagcGGAGCGCGCGGuagcGCCCGCg -3'
miRNA:   3'- gUCCGUCGa---CUUCGCGCGCC----UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 129715 0.85 0.047286
Target:  5'- gCAGGCAGUUGAgcAGCagguuCGCGGGCCCGCg -3'
miRNA:   3'- -GUCCGUCGACU--UCGc----GCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 116128 0.82 0.07399
Target:  5'- uCGGGCAGCacGAAGcCGCGCGaGCCCGCg -3'
miRNA:   3'- -GUCCGUCGa-CUUC-GCGCGCcUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 122315 0.82 0.080014
Target:  5'- -cGGCAGCUGGcgguGCGCGUGGACCC-Cg -3'
miRNA:   3'- guCCGUCGACUu---CGCGCGCCUGGGcG- -5'
29526 3' -60.8 NC_006151.1 + 56335 0.81 0.093496
Target:  5'- -cGGUGGCUGGAGCGCGCGcGcgcCCCGCc -3'
miRNA:   3'- guCCGUCGACUUCGCGCGC-Cu--GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 113540 0.8 0.09845
Target:  5'- -uGGC-GCUGAugcGCGcCGCGGGCCCGCg -3'
miRNA:   3'- guCCGuCGACUu--CGC-GCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 54058 0.8 0.111941
Target:  5'- aUAGGUGGCguugGuGGCGCGCGGACCCucuGCg -3'
miRNA:   3'- -GUCCGUCGa---CuUCGCGCGCCUGGG---CG- -5'
29526 3' -60.8 NC_006151.1 + 29129 0.79 0.114839
Target:  5'- gCGGGCcgggaagucGCgGGAGCGCGCGuGACCCGCc -3'
miRNA:   3'- -GUCCGu--------CGaCUUCGCGCGC-CUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 46590 0.79 0.117807
Target:  5'- aCGGGCGgccguGCUGAGGCGCGagcagagaCGGACCCGg -3'
miRNA:   3'- -GUCCGU-----CGACUUCGCGC--------GCCUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 113905 0.79 0.117807
Target:  5'- -cGGCGcaagacGCUGAcGCGCGCGG-CCCGCg -3'
miRNA:   3'- guCCGU------CGACUuCGCGCGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 90138 0.79 0.130409
Target:  5'- gGGGCGGUaGu-GCGCGuCGGGCCCGCu -3'
miRNA:   3'- gUCCGUCGaCuuCGCGC-GCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 104548 0.77 0.157045
Target:  5'- gAGGCcgAGCUGGccgcccugggcgcgcGGCGCGCGGACgUGCu -3'
miRNA:   3'- gUCCG--UCGACU---------------UCGCGCGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 98223 0.77 0.159408
Target:  5'- -cGGCGGCgcccGCGCGCGGACCCu- -3'
miRNA:   3'- guCCGUCGacuuCGCGCGCCUGGGcg -5'
29526 3' -60.8 NC_006151.1 + 127472 0.77 0.167519
Target:  5'- uGGGCGGCgcgGAacgAGC-CGCGGAcCCCGCg -3'
miRNA:   3'- gUCCGUCGa--CU---UCGcGCGCCU-GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 130943 0.77 0.167519
Target:  5'- gGGGCGGCggGggGuCGCGCGGGCgCGg -3'
miRNA:   3'- gUCCGUCGa-CuuC-GCGCGCCUGgGCg -5'
29526 3' -60.8 NC_006151.1 + 21490 0.76 0.180377
Target:  5'- gCAGGCGGCcGggGgGCGCGGGCgucaCCGg -3'
miRNA:   3'- -GUCCGUCGaCuuCgCGCGCCUG----GGCg -5'
29526 3' -60.8 NC_006151.1 + 10661 0.76 0.184854
Target:  5'- cCAGGCGGCgGggGaGCGCGGAgcgcgccgccccCCCGUg -3'
miRNA:   3'- -GUCCGUCGaCuuCgCGCGCCU------------GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 93668 0.76 0.189429
Target:  5'- gCAGGaGGCUGucGCGCGgGGcgcgcGCCCGCa -3'
miRNA:   3'- -GUCCgUCGACuuCGCGCgCC-----UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 77079 0.76 0.193631
Target:  5'- gAGGCucaccacgugcgAGCUGAAGCGCgggcgcgGCGGGCgCGCg -3'
miRNA:   3'- gUCCG------------UCGACUUCGCG-------CGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 4606 0.76 0.194103
Target:  5'- --cGUGGCcgUGggGCGCGUGGACCCGg -3'
miRNA:   3'- gucCGUCG--ACuuCGCGCGCCUGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.