Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29526 | 5' | -60 | NC_006151.1 | + | 3842 | 0.68 | 0.536387 |
Target: 5'- uGGAGGGCCCGGagcCGGGga-GGCCGg -3' miRNA: 3'- uUCUCCUGGGUCa--GCCCgaaCCGGUg -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 3933 | 0.67 | 0.596501 |
Target: 5'- -cGGGGGCaggCCGGgcgCGGGCUccgcgggcccgGGCCGCg -3' miRNA: 3'- uuCUCCUG---GGUCa--GCCCGAa----------CCGGUG- -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 4520 | 0.68 | 0.546282 |
Target: 5'- cGGcAGGGCCCAGagCGGGUccugggcGGCCAUg -3' miRNA: 3'- uUC-UCCUGGGUCa-GCCCGaa-----CCGGUG- -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 4786 | 0.68 | 0.566239 |
Target: 5'- ---cGGGCCCGGcCGcGGCgcgguagcgGGCCGCg -3' miRNA: 3'- uucuCCUGGGUCaGC-CCGaa-------CCGGUG- -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 5011 | 0.71 | 0.381326 |
Target: 5'- -cGGGGGCCgGG-CGGGCUccggGGCCGg -3' miRNA: 3'- uuCUCCUGGgUCaGCCCGAa---CCGGUg -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 5256 | 0.69 | 0.478517 |
Target: 5'- -cGGGGGCCCGGggggcggaGGGCgagcgGGCCGg -3' miRNA: 3'- uuCUCCUGGGUCag------CCCGaa---CCGGUg -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 6113 | 0.66 | 0.707883 |
Target: 5'- aAGGAGGACggggCGGccUCGuGGCUccGGCCGCg -3' miRNA: 3'- -UUCUCCUGg---GUC--AGC-CCGAa-CCGGUG- -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 8217 | 0.67 | 0.647356 |
Target: 5'- gAAGAGGGCCgGGUCcccuucccggcgGGGag-GGCCGg -3' miRNA: 3'- -UUCUCCUGGgUCAG------------CCCgaaCCGGUg -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 9382 | 0.69 | 0.516791 |
Target: 5'- gGAGGGGGCCCcccgcgCGGGUcgGGCCu- -3' miRNA: 3'- -UUCUCCUGGGuca---GCCCGaaCCGGug -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 11048 | 0.69 | 0.478517 |
Target: 5'- -cGGGGGCCCGGcCuGGaCgcgGGCCACa -3' miRNA: 3'- uuCUCCUGGGUCaGcCC-Gaa-CCGGUG- -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 14252 | 0.74 | 0.265353 |
Target: 5'- cGGGGGAuccCCCGGUCGGGgUgGGCCGg -3' miRNA: 3'- uUCUCCU---GGGUCAGCCCgAaCCGGUg -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 18764 | 0.67 | 0.596501 |
Target: 5'- -cGGGGuGCCCGGggccCGGGCcggGGCCGu -3' miRNA: 3'- uuCUCC-UGGGUCa---GCCCGaa-CCGGUg -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 19373 | 0.68 | 0.536387 |
Target: 5'- uAGAGG-CCCGugucGUUGGGCgUGGCC-Cg -3' miRNA: 3'- uUCUCCuGGGU----CAGCCCGaACCGGuG- -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 22534 | 0.71 | 0.373163 |
Target: 5'- cGGGcGGGGCCgGGUCaGGCggaGGCCACg -3' miRNA: 3'- -UUC-UCCUGGgUCAGcCCGaa-CCGGUG- -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 28231 | 0.71 | 0.389608 |
Target: 5'- cGAGGGGGCCgGGccgaCGGGCccaUUGGCCGg -3' miRNA: 3'- -UUCUCCUGGgUCa---GCCCG---AACCGGUg -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 31667 | 0.66 | 0.667669 |
Target: 5'- gAGGAGGGCggAGgaaGGGCcgGGCCGCc -3' miRNA: 3'- -UUCUCCUGggUCag-CCCGaaCCGGUG- -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 36494 | 0.77 | 0.170858 |
Target: 5'- aGGGGGGACCCGGUCGGugaGCccgGGCCGg -3' miRNA: 3'- -UUCUCCUGGGUCAGCC---CGaa-CCGGUg -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 39751 | 0.66 | 0.677787 |
Target: 5'- -cGGGGACCCGGacuuugacgCGGGC---GCCGCc -3' miRNA: 3'- uuCUCCUGGGUCa--------GCCCGaacCGGUG- -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 41502 | 0.68 | 0.566239 |
Target: 5'- cGAGGGGAgCCAaUgGGGCggGcGCCGCg -3' miRNA: 3'- -UUCUCCUgGGUcAgCCCGaaC-CGGUG- -5' |
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29526 | 5' | -60 | NC_006151.1 | + | 49488 | 0.68 | 0.556235 |
Target: 5'- -cGuGGACUgAGUCGGGCgUGcGCgCACa -3' miRNA: 3'- uuCuCCUGGgUCAGCCCGaAC-CG-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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