miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 5' -60 NC_006151.1 + 55065 0.87 0.03312
Target:  5'- -cGAGGACCCGG-CGGGCUcGGCCGCg -3'
miRNA:   3'- uuCUCCUGGGUCaGCCCGAaCCGGUG- -5'
29526 5' -60 NC_006151.1 + 36494 0.77 0.170858
Target:  5'- aGGGGGGACCCGGUCGGugaGCccgGGCCGg -3'
miRNA:   3'- -UUCUCCUGGGUCAGCC---CGaa-CCGGUg -5'
29526 5' -60 NC_006151.1 + 131108 0.76 0.203416
Target:  5'- cGGGGGGCCCGGcCGcGGCgcgggaGGCCGCg -3'
miRNA:   3'- uUCUCCUGGGUCaGC-CCGaa----CCGGUG- -5'
29526 5' -60 NC_006151.1 + 14252 0.74 0.265353
Target:  5'- cGGGGGAuccCCCGGUCGGGgUgGGCCGg -3'
miRNA:   3'- uUCUCCU---GGGUCAGCCCgAaCCGGUg -5'
29526 5' -60 NC_006151.1 + 112574 0.73 0.305161
Target:  5'- gAGGAGGACUCGcccgCGGGCUUcguggaGGCCGCc -3'
miRNA:   3'- -UUCUCCUGGGUca--GCCCGAA------CCGGUG- -5'
29526 5' -60 NC_006151.1 + 141975 0.72 0.357195
Target:  5'- --cGGGAUCCGGUCGGGC--GGCC-Cg -3'
miRNA:   3'- uucUCCUGGGUCAGCCCGaaCCGGuG- -5'
29526 5' -60 NC_006151.1 + 133400 0.72 0.365119
Target:  5'- --cGGGGCCgAG-CGGGCggucUUGGCCGCg -3'
miRNA:   3'- uucUCCUGGgUCaGCCCG----AACCGGUG- -5'
29526 5' -60 NC_006151.1 + 22534 0.71 0.373163
Target:  5'- cGGGcGGGGCCgGGUCaGGCggaGGCCACg -3'
miRNA:   3'- -UUC-UCCUGGgUCAGcCCGaa-CCGGUG- -5'
29526 5' -60 NC_006151.1 + 5011 0.71 0.381326
Target:  5'- -cGGGGGCCgGG-CGGGCUccggGGCCGg -3'
miRNA:   3'- uuCUCCUGGgUCaGCCCGAa---CCGGUg -5'
29526 5' -60 NC_006151.1 + 28231 0.71 0.389608
Target:  5'- cGAGGGGGCCgGGccgaCGGGCccaUUGGCCGg -3'
miRNA:   3'- -UUCUCCUGGgUCa---GCCCG---AACCGGUg -5'
29526 5' -60 NC_006151.1 + 127540 0.71 0.398007
Target:  5'- --cGGGGCCCAGg-GGGCgucgucgucgUGGCCGCc -3'
miRNA:   3'- uucUCCUGGGUCagCCCGa---------ACCGGUG- -5'
29526 5' -60 NC_006151.1 + 59537 0.71 0.398853
Target:  5'- -uGAGGGCCCAGcgcgCGGGCacguugaagucgggGGCCAg -3'
miRNA:   3'- uuCUCCUGGGUCa---GCCCGaa------------CCGGUg -5'
29526 5' -60 NC_006151.1 + 103872 0.71 0.415148
Target:  5'- cGAGGGGACgCUGGUCGaGGCgc-GCCACc -3'
miRNA:   3'- -UUCUCCUG-GGUCAGC-CCGaacCGGUG- -5'
29526 5' -60 NC_006151.1 + 50653 0.7 0.441689
Target:  5'- cGGGcGGACCCgAGUCGuGCgcGGCCGCa -3'
miRNA:   3'- -UUCuCCUGGG-UCAGCcCGaaCCGGUG- -5'
29526 5' -60 NC_006151.1 + 64865 0.7 0.469165
Target:  5'- cGGAGGgccgcuGCCCGG-CGGGagcagGGCCGCg -3'
miRNA:   3'- uUCUCC------UGGGUCaGCCCgaa--CCGGUG- -5'
29526 5' -60 NC_006151.1 + 5256 0.69 0.478517
Target:  5'- -cGGGGGCCCGGggggcggaGGGCgagcgGGCCGg -3'
miRNA:   3'- uuCUCCUGGGUCag------CCCGaa---CCGGUg -5'
29526 5' -60 NC_006151.1 + 11048 0.69 0.478517
Target:  5'- -cGGGGGCCCGGcCuGGaCgcgGGCCACa -3'
miRNA:   3'- uuCUCCUGGGUCaGcCC-Gaa-CCGGUG- -5'
29526 5' -60 NC_006151.1 + 102691 0.69 0.478517
Target:  5'- cGGGGGcGCCCGGcgCGGGCggcgcGGCCGa -3'
miRNA:   3'- uUCUCC-UGGGUCa-GCCCGaa---CCGGUg -5'
29526 5' -60 NC_006151.1 + 83432 0.69 0.487959
Target:  5'- cGGGGGGCUCcc-CGGGCagcgUGGCCGCc -3'
miRNA:   3'- uUCUCCUGGGucaGCCCGa---ACCGGUG- -5'
29526 5' -60 NC_006151.1 + 79103 0.69 0.516791
Target:  5'- -cGAGcGCCCcuccGUCGuGGCUgGGCCACg -3'
miRNA:   3'- uuCUCcUGGGu---CAGC-CCGAaCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.