miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 5' -60 NC_006151.1 + 3842 0.68 0.536387
Target:  5'- uGGAGGGCCCGGagcCGGGga-GGCCGg -3'
miRNA:   3'- uUCUCCUGGGUCa--GCCCgaaCCGGUg -5'
29526 5' -60 NC_006151.1 + 3933 0.67 0.596501
Target:  5'- -cGGGGGCaggCCGGgcgCGGGCUccgcgggcccgGGCCGCg -3'
miRNA:   3'- uuCUCCUG---GGUCa--GCCCGAa----------CCGGUG- -5'
29526 5' -60 NC_006151.1 + 4520 0.68 0.546282
Target:  5'- cGGcAGGGCCCAGagCGGGUccugggcGGCCAUg -3'
miRNA:   3'- uUC-UCCUGGGUCa-GCCCGaa-----CCGGUG- -5'
29526 5' -60 NC_006151.1 + 4786 0.68 0.566239
Target:  5'- ---cGGGCCCGGcCGcGGCgcgguagcgGGCCGCg -3'
miRNA:   3'- uucuCCUGGGUCaGC-CCGaa-------CCGGUG- -5'
29526 5' -60 NC_006151.1 + 5011 0.71 0.381326
Target:  5'- -cGGGGGCCgGG-CGGGCUccggGGCCGg -3'
miRNA:   3'- uuCUCCUGGgUCaGCCCGAa---CCGGUg -5'
29526 5' -60 NC_006151.1 + 5256 0.69 0.478517
Target:  5'- -cGGGGGCCCGGggggcggaGGGCgagcgGGCCGg -3'
miRNA:   3'- uuCUCCUGGGUCag------CCCGaa---CCGGUg -5'
29526 5' -60 NC_006151.1 + 6113 0.66 0.707883
Target:  5'- aAGGAGGACggggCGGccUCGuGGCUccGGCCGCg -3'
miRNA:   3'- -UUCUCCUGg---GUC--AGC-CCGAa-CCGGUG- -5'
29526 5' -60 NC_006151.1 + 8217 0.67 0.647356
Target:  5'- gAAGAGGGCCgGGUCcccuucccggcgGGGag-GGCCGg -3'
miRNA:   3'- -UUCUCCUGGgUCAG------------CCCgaaCCGGUg -5'
29526 5' -60 NC_006151.1 + 9382 0.69 0.516791
Target:  5'- gGAGGGGGCCCcccgcgCGGGUcgGGCCu- -3'
miRNA:   3'- -UUCUCCUGGGuca---GCCCGaaCCGGug -5'
29526 5' -60 NC_006151.1 + 11048 0.69 0.478517
Target:  5'- -cGGGGGCCCGGcCuGGaCgcgGGCCACa -3'
miRNA:   3'- uuCUCCUGGGUCaGcCC-Gaa-CCGGUG- -5'
29526 5' -60 NC_006151.1 + 14252 0.74 0.265353
Target:  5'- cGGGGGAuccCCCGGUCGGGgUgGGCCGg -3'
miRNA:   3'- uUCUCCU---GGGUCAGCCCgAaCCGGUg -5'
29526 5' -60 NC_006151.1 + 18764 0.67 0.596501
Target:  5'- -cGGGGuGCCCGGggccCGGGCcggGGCCGu -3'
miRNA:   3'- uuCUCC-UGGGUCa---GCCCGaa-CCGGUg -5'
29526 5' -60 NC_006151.1 + 19373 0.68 0.536387
Target:  5'- uAGAGG-CCCGugucGUUGGGCgUGGCC-Cg -3'
miRNA:   3'- uUCUCCuGGGU----CAGCCCGaACCGGuG- -5'
29526 5' -60 NC_006151.1 + 22534 0.71 0.373163
Target:  5'- cGGGcGGGGCCgGGUCaGGCggaGGCCACg -3'
miRNA:   3'- -UUC-UCCUGGgUCAGcCCGaa-CCGGUG- -5'
29526 5' -60 NC_006151.1 + 28231 0.71 0.389608
Target:  5'- cGAGGGGGCCgGGccgaCGGGCccaUUGGCCGg -3'
miRNA:   3'- -UUCUCCUGGgUCa---GCCCG---AACCGGUg -5'
29526 5' -60 NC_006151.1 + 31667 0.66 0.667669
Target:  5'- gAGGAGGGCggAGgaaGGGCcgGGCCGCc -3'
miRNA:   3'- -UUCUCCUGggUCag-CCCGaaCCGGUG- -5'
29526 5' -60 NC_006151.1 + 36494 0.77 0.170858
Target:  5'- aGGGGGGACCCGGUCGGugaGCccgGGCCGg -3'
miRNA:   3'- -UUCUCCUGGGUCAGCC---CGaa-CCGGUg -5'
29526 5' -60 NC_006151.1 + 39751 0.66 0.677787
Target:  5'- -cGGGGACCCGGacuuugacgCGGGC---GCCGCc -3'
miRNA:   3'- uuCUCCUGGGUCa--------GCCCGaacCGGUG- -5'
29526 5' -60 NC_006151.1 + 41502 0.68 0.566239
Target:  5'- cGAGGGGAgCCAaUgGGGCggGcGCCGCg -3'
miRNA:   3'- -UUCUCCUgGGUcAgCCCGaaC-CGGUG- -5'
29526 5' -60 NC_006151.1 + 49488 0.68 0.556235
Target:  5'- -cGuGGACUgAGUCGGGCgUGcGCgCACa -3'
miRNA:   3'- uuCuCCUGGgUCAGCCCGaAC-CG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.