miRNA display CGI


Results 41 - 60 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29528 3' -55.4 NC_006151.1 + 85811 0.68 0.834605
Target:  5'- aGCGCCACCagcucaaCCGG-UGCGcCUgGUGGc -3'
miRNA:   3'- aCGUGGUGGa------GGUCuACGU-GAgCACC- -5'
29528 3' -55.4 NC_006151.1 + 65378 0.68 0.834605
Target:  5'- gUGCACCACgUgccCCGGgcGCGC-CGUGa -3'
miRNA:   3'- -ACGUGGUGgA---GGUCuaCGUGaGCACc -5'
29528 3' -55.4 NC_006151.1 + 39773 0.68 0.834605
Target:  5'- gGCGCCGCCUUCGG--GCACcgCGcGGc -3'
miRNA:   3'- aCGUGGUGGAGGUCuaCGUGa-GCaCC- -5'
29528 3' -55.4 NC_006151.1 + 27238 0.68 0.833769
Target:  5'- cGCACCuCCUCgGGGUcgggcgggggcccGUACUCG-GGg -3'
miRNA:   3'- aCGUGGuGGAGgUCUA-------------CGUGAGCaCC- -5'
29528 3' -55.4 NC_006151.1 + 103892 0.68 0.826164
Target:  5'- cGCGCCACCUggcgCUGGAggugGCGCgcgcggccgcCGUGGa -3'
miRNA:   3'- aCGUGGUGGA----GGUCUa---CGUGa---------GCACC- -5'
29528 3' -55.4 NC_006151.1 + 13666 0.68 0.826164
Target:  5'- gGCAcCCGCCUCCGGGgacGCGC-CGg-- -3'
miRNA:   3'- aCGU-GGUGGAGGUCUa--CGUGaGCacc -5'
29528 3' -55.4 NC_006151.1 + 128201 0.68 0.816671
Target:  5'- cGCGCUccauggcGCC-CCAGGcgUGCgacgaGCUCGUGGg -3'
miRNA:   3'- aCGUGG-------UGGaGGUCU--ACG-----UGAGCACC- -5'
29528 3' -55.4 NC_006151.1 + 122161 0.68 0.80875
Target:  5'- cGCGCgCACgaUCGGcgGCggGCUCGUGGu -3'
miRNA:   3'- aCGUG-GUGgaGGUCuaCG--UGAGCACC- -5'
29528 3' -55.4 NC_006151.1 + 62017 0.69 0.799795
Target:  5'- cGCGCCGCCcuggcggCCAGccccccgcUGCGCcgCGUGGc -3'
miRNA:   3'- aCGUGGUGGa------GGUCu-------ACGUGa-GCACC- -5'
29528 3' -55.4 NC_006151.1 + 81542 0.69 0.781431
Target:  5'- gGCGgCGCgCUCCGcGGUGCACauggcCGUGGu -3'
miRNA:   3'- aCGUgGUG-GAGGU-CUACGUGa----GCACC- -5'
29528 3' -55.4 NC_006151.1 + 75948 0.69 0.781431
Target:  5'- aGgACCGCgUCCuuguUGCGCUCGUGc -3'
miRNA:   3'- aCgUGGUGgAGGucu-ACGUGAGCACc -5'
29528 3' -55.4 NC_006151.1 + 118104 0.69 0.77204
Target:  5'- cUGCGCCGCgaCCugcuGgcGCuGCUCGUGGc -3'
miRNA:   3'- -ACGUGGUGgaGGu---CuaCG-UGAGCACC- -5'
29528 3' -55.4 NC_006151.1 + 86607 0.69 0.762522
Target:  5'- cGCGCCGCCgagucgCCGGAccgcgaGCGCgUGUGGc -3'
miRNA:   3'- aCGUGGUGGa-----GGUCUa-----CGUGaGCACC- -5'
29528 3' -55.4 NC_006151.1 + 64977 0.7 0.752887
Target:  5'- aGCGCCACgUCCAGcaGCA--CGUGGc -3'
miRNA:   3'- aCGUGGUGgAGGUCuaCGUgaGCACC- -5'
29528 3' -55.4 NC_006151.1 + 85585 0.7 0.752887
Target:  5'- cUGCGCaacaACUUCCAGcucggcGCGCUCGUGc -3'
miRNA:   3'- -ACGUGg---UGGAGGUCua----CGUGAGCACc -5'
29528 3' -55.4 NC_006151.1 + 13385 0.7 0.743143
Target:  5'- gGCAcCCGCCUCCGGGgacGCGC-CGgccaaugGGg -3'
miRNA:   3'- aCGU-GGUGGAGGUCUa--CGUGaGCa------CC- -5'
29528 3' -55.4 NC_006151.1 + 95679 0.7 0.733301
Target:  5'- cGCGCuCGCCgUCCAGGUGcCGCUgGUa- -3'
miRNA:   3'- aCGUG-GUGG-AGGUCUAC-GUGAgCAcc -5'
29528 3' -55.4 NC_006151.1 + 70780 0.7 0.723369
Target:  5'- cGCGCgCGCCUCCg---GCACcggCGUGGc -3'
miRNA:   3'- aCGUG-GUGGAGGucuaCGUGa--GCACC- -5'
29528 3' -55.4 NC_006151.1 + 56213 0.7 0.703277
Target:  5'- cGCACCGCCUggcCCuGGUGCGCccCGaGGa -3'
miRNA:   3'- aCGUGGUGGA---GGuCUACGUGa-GCaCC- -5'
29528 3' -55.4 NC_006151.1 + 49708 0.7 0.703277
Target:  5'- cGCACCcCCUCCccgGGAggggGUGCUCG-GGa -3'
miRNA:   3'- aCGUGGuGGAGG---UCUa---CGUGAGCaCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.