miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29528 3' -55.4 NC_006151.1 + 65378 0.68 0.834605
Target:  5'- gUGCACCACgUgccCCGGgcGCGC-CGUGa -3'
miRNA:   3'- -ACGUGGUGgA---GGUCuaCGUGaGCACc -5'
29528 3' -55.4 NC_006151.1 + 65514 0.66 0.918941
Target:  5'- cGCGCCuCCUCCGcGGccaGCAgcgucaugacggcCUCGUGGc -3'
miRNA:   3'- aCGUGGuGGAGGU-CUa--CGU-------------GAGCACC- -5'
29528 3' -55.4 NC_006151.1 + 66532 0.67 0.881787
Target:  5'- cGCGCCGCgCUCUucGGggGCGCgcgcggccgcgccgcCGUGGa -3'
miRNA:   3'- aCGUGGUG-GAGG--UCuaCGUGa--------------GCACC- -5'
29528 3' -55.4 NC_006151.1 + 67284 0.72 0.641825
Target:  5'- cUGCGCCGCUggugCCGcGAcGCGCgCGUGGa -3'
miRNA:   3'- -ACGUGGUGGa---GGU-CUaCGUGaGCACC- -5'
29528 3' -55.4 NC_006151.1 + 67786 0.67 0.858777
Target:  5'- gGCGuCCACgugCUCCAcGcgGCACUCGcGGc -3'
miRNA:   3'- aCGU-GGUG---GAGGU-CuaCGUGAGCaCC- -5'
29528 3' -55.4 NC_006151.1 + 70780 0.7 0.723369
Target:  5'- cGCGCgCGCCUCCg---GCACcggCGUGGc -3'
miRNA:   3'- aCGUG-GUGGAGGucuaCGUGa--GCACC- -5'
29528 3' -55.4 NC_006151.1 + 73578 0.68 0.848522
Target:  5'- cGCACCACCgucagggcgaagCCgGGGUGCagcuggcgccgcaGCUgGUGGg -3'
miRNA:   3'- aCGUGGUGGa-----------GG-UCUACG-------------UGAgCACC- -5'
29528 3' -55.4 NC_006151.1 + 73997 0.75 0.471274
Target:  5'- gGCGCCACCgaggCCAGGaggggcgucgUGCGCUCGg-- -3'
miRNA:   3'- aCGUGGUGGa---GGUCU----------ACGUGAGCacc -5'
29528 3' -55.4 NC_006151.1 + 74770 0.67 0.869428
Target:  5'- cUGCGCCACgagCCgcgcgagcgcgcagaAGGUGCGCUCGcucccgUGGa -3'
miRNA:   3'- -ACGUGGUGga-GG---------------UCUACGUGAGC------ACC- -5'
29528 3' -55.4 NC_006151.1 + 75520 0.66 0.907649
Target:  5'- uUGC-CCACCagCGGGUacgGCACcugCGUGGc -3'
miRNA:   3'- -ACGuGGUGGagGUCUA---CGUGa--GCACC- -5'
29528 3' -55.4 NC_006151.1 + 75948 0.69 0.781431
Target:  5'- aGgACCGCgUCCuuguUGCGCUCGUGc -3'
miRNA:   3'- aCgUGGUGgAGGucu-ACGUGAGCACc -5'
29528 3' -55.4 NC_006151.1 + 81542 0.69 0.781431
Target:  5'- gGCGgCGCgCUCCGcGGUGCACauggcCGUGGu -3'
miRNA:   3'- aCGUgGUG-GAGGU-CUACGUGa----GCACC- -5'
29528 3' -55.4 NC_006151.1 + 81771 0.67 0.873863
Target:  5'- gGCGCCACCg--GGAcGCGCUCGg-- -3'
miRNA:   3'- aCGUGGUGGaggUCUaCGUGAGCacc -5'
29528 3' -55.4 NC_006151.1 + 84021 0.68 0.850919
Target:  5'- gUGCGCCGCC-CCGacUGCGUgugCGUGGu -3'
miRNA:   3'- -ACGUGGUGGaGGUcuACGUGa--GCACC- -5'
29528 3' -55.4 NC_006151.1 + 84925 0.78 0.326696
Target:  5'- gGCGCCGCCUCCGGcGUGCuCUucggcaCGUGGu -3'
miRNA:   3'- aCGUGGUGGAGGUC-UACGuGA------GCACC- -5'
29528 3' -55.4 NC_006151.1 + 84959 0.66 0.9137
Target:  5'- -aCGCCACgCUCCAGGccaCGCUCGUcgcGGa -3'
miRNA:   3'- acGUGGUG-GAGGUCUac-GUGAGCA---CC- -5'
29528 3' -55.4 NC_006151.1 + 85585 0.7 0.752887
Target:  5'- cUGCGCaacaACUUCCAGcucggcGCGCUCGUGc -3'
miRNA:   3'- -ACGUGg---UGGAGGUCua----CGUGAGCACc -5'
29528 3' -55.4 NC_006151.1 + 85623 0.66 0.907649
Target:  5'- cGCGCCGCCgCCGcGcgGCGCcagCG-GGg -3'
miRNA:   3'- aCGUGGUGGaGGU-CuaCGUGa--GCaCC- -5'
29528 3' -55.4 NC_006151.1 + 85811 0.68 0.834605
Target:  5'- aGCGCCACCagcucaaCCGG-UGCGcCUgGUGGc -3'
miRNA:   3'- aCGUGGUGGa------GGUCuACGU-GAgCACC- -5'
29528 3' -55.4 NC_006151.1 + 86607 0.69 0.762522
Target:  5'- cGCGCCGCCgagucgCCGGAccgcgaGCGCgUGUGGc -3'
miRNA:   3'- aCGUGGUGGa-----GGUCUa-----CGUGaGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.