miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29528 3' -55.4 NC_006151.1 + 5703 0.66 0.9137
Target:  5'- cUGCgGCCACCgcugCUGGcUGUGCUgGUGGc -3'
miRNA:   3'- -ACG-UGGUGGa---GGUCuACGUGAgCACC- -5'
29528 3' -55.4 NC_006151.1 + 13385 0.7 0.743143
Target:  5'- gGCAcCCGCCUCCGGGgacGCGC-CGgccaaugGGg -3'
miRNA:   3'- aCGU-GGUGGAGGUCUa--CGUGaGCa------CC- -5'
29528 3' -55.4 NC_006151.1 + 13666 0.68 0.826164
Target:  5'- gGCAcCCGCCUCCGGGgacGCGC-CGg-- -3'
miRNA:   3'- aCGU-GGUGGAGGUCUa--CGUGaGCacc -5'
29528 3' -55.4 NC_006151.1 + 19287 0.66 0.919511
Target:  5'- gGC-CCACCggggCCAGcgGCGCgggCGgccGGu -3'
miRNA:   3'- aCGuGGUGGa---GGUCuaCGUGa--GCa--CC- -5'
29528 3' -55.4 NC_006151.1 + 22045 0.66 0.925079
Target:  5'- gUGCGCgCACCcgUCCGcGAUGCGgUaccaggccaCGUGGg -3'
miRNA:   3'- -ACGUG-GUGG--AGGU-CUACGUgA---------GCACC- -5'
29528 3' -55.4 NC_006151.1 + 22154 0.71 0.687023
Target:  5'- aGCGCCACCaccccgcacggguccUCCAGcggGCGCgUGUGGu -3'
miRNA:   3'- aCGUGGUGG---------------AGGUCua-CGUGaGCACC- -5'
29528 3' -55.4 NC_006151.1 + 27238 0.68 0.833769
Target:  5'- cGCACCuCCUCgGGGUcgggcgggggcccGUACUCG-GGg -3'
miRNA:   3'- aCGUGGuGGAGgUCUA-------------CGUGAGCaCC- -5'
29528 3' -55.4 NC_006151.1 + 38189 0.66 0.925079
Target:  5'- gGCGCCGCU----GGUGCGCUacagCGUGGa -3'
miRNA:   3'- aCGUGGUGGagguCUACGUGA----GCACC- -5'
29528 3' -55.4 NC_006151.1 + 39773 0.68 0.834605
Target:  5'- gGCGCCGCCUUCGG--GCACcgCGcGGc -3'
miRNA:   3'- aCGUGGUGGAGGUCuaCGUGa-GCaCC- -5'
29528 3' -55.4 NC_006151.1 + 40036 0.83 0.169278
Target:  5'- cGCGCCGCCgCCGGggGCGC-CGUGGa -3'
miRNA:   3'- aCGUGGUGGaGGUCuaCGUGaGCACC- -5'
29528 3' -55.4 NC_006151.1 + 48072 0.66 0.907649
Target:  5'- cGCGCCgaaaaaggauacACCagCCGcGAUGUcgccGCUCGUGGc -3'
miRNA:   3'- aCGUGG------------UGGa-GGU-CUACG----UGAGCACC- -5'
29528 3' -55.4 NC_006151.1 + 49708 0.7 0.703277
Target:  5'- cGCACCcCCUCCccgGGAggggGUGCUCG-GGa -3'
miRNA:   3'- aCGUGGuGGAGG---UCUa---CGUGAGCaCC- -5'
29528 3' -55.4 NC_006151.1 + 50256 0.71 0.672702
Target:  5'- gGCGCCaugagcACCUUCGGAcGCGCgucCGUGGc -3'
miRNA:   3'- aCGUGG------UGGAGGUCUaCGUGa--GCACC- -5'
29528 3' -55.4 NC_006151.1 + 55126 0.66 0.9137
Target:  5'- aUGCGCCACaucggcgacaUCaCGGAgacggUGCGCUCGUa- -3'
miRNA:   3'- -ACGUGGUGg---------AG-GUCU-----ACGUGAGCAcc -5'
29528 3' -55.4 NC_006151.1 + 56213 0.7 0.703277
Target:  5'- cGCACCGCCUggcCCuGGUGCGCccCGaGGa -3'
miRNA:   3'- aCGUGGUGGA---GGuCUACGUGa-GCaCC- -5'
29528 3' -55.4 NC_006151.1 + 58820 0.66 0.900715
Target:  5'- cGCGCCgGCC-CCgucgcggcacagcAGGUGCGCcagcgCGUGGa -3'
miRNA:   3'- aCGUGG-UGGaGG-------------UCUACGUGa----GCACC- -5'
29528 3' -55.4 NC_006151.1 + 59002 0.68 0.84286
Target:  5'- aGCGCgGCgUCCAGcgGCGCgUCGaagccgcccUGGg -3'
miRNA:   3'- aCGUGgUGgAGGUCuaCGUG-AGC---------ACC- -5'
29528 3' -55.4 NC_006151.1 + 61629 0.66 0.913106
Target:  5'- cGCucaacgaCACCUCCGGcggcGUGUggacgcgccagccGCUCGUGGc -3'
miRNA:   3'- aCGug-----GUGGAGGUC----UACG-------------UGAGCACC- -5'
29528 3' -55.4 NC_006151.1 + 62017 0.69 0.799795
Target:  5'- cGCGCCGCCcuggcggCCAGccccccgcUGCGCcgCGUGGc -3'
miRNA:   3'- aCGUGGUGGa------GGUCu-------ACGUGa-GCACC- -5'
29528 3' -55.4 NC_006151.1 + 64977 0.7 0.752887
Target:  5'- aGCGCCACgUCCAGcaGCA--CGUGGc -3'
miRNA:   3'- aCGUGGUGgAGGUCuaCGUgaGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.