miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29528 3' -55.4 NC_006151.1 + 40036 0.83 0.169278
Target:  5'- cGCGCCGCCgCCGGggGCGC-CGUGGa -3'
miRNA:   3'- aCGUGGUGGaGGUCuaCGUGaGCACC- -5'
29528 3' -55.4 NC_006151.1 + 111844 0.78 0.304851
Target:  5'- cGCACCGCgUCgGGggGCGCUCG-GGg -3'
miRNA:   3'- aCGUGGUGgAGgUCuaCGUGAGCaCC- -5'
29528 3' -55.4 NC_006151.1 + 115777 0.78 0.304851
Target:  5'- aGCACgGCCUCCucGGgcGCGCUCGUcGGg -3'
miRNA:   3'- aCGUGgUGGAGG--UCuaCGUGAGCA-CC- -5'
29528 3' -55.4 NC_006151.1 + 84925 0.78 0.326696
Target:  5'- gGCGCCGCCUCCGGcGUGCuCUucggcaCGUGGu -3'
miRNA:   3'- aCGUGGUGGAGGUC-UACGuGA------GCACC- -5'
29528 3' -55.4 NC_006151.1 + 96019 0.76 0.382076
Target:  5'- cGCACCGCCUCCucgguGGUGCGCggcagGGg -3'
miRNA:   3'- aCGUGGUGGAGGu----CUACGUGagca-CC- -5'
29528 3' -55.4 NC_006151.1 + 94103 0.75 0.425284
Target:  5'- gUGCACCACCUC--GAUGCACUCcUGc -3'
miRNA:   3'- -ACGUGGUGGAGguCUACGUGAGcACc -5'
29528 3' -55.4 NC_006151.1 + 73997 0.75 0.471274
Target:  5'- gGCGCCACCgaggCCAGGaggggcgucgUGCGCUCGg-- -3'
miRNA:   3'- aCGUGGUGGa---GGUCU----------ACGUGAGCacc -5'
29528 3' -55.4 NC_006151.1 + 109539 0.73 0.549607
Target:  5'- aGCGCC-CC-CCGGAgGCGC-CGUGGa -3'
miRNA:   3'- aCGUGGuGGaGGUCUaCGUGaGCACC- -5'
29528 3' -55.4 NC_006151.1 + 67284 0.72 0.641825
Target:  5'- cUGCGCCGCUggugCCGcGAcGCGCgCGUGGa -3'
miRNA:   3'- -ACGUGGUGGa---GGU-CUaCGUGaGCACC- -5'
29528 3' -55.4 NC_006151.1 + 50256 0.71 0.672702
Target:  5'- gGCGCCaugagcACCUUCGGAcGCGCgucCGUGGc -3'
miRNA:   3'- aCGUGG------UGGAGGUCUaCGUGa--GCACC- -5'
29528 3' -55.4 NC_006151.1 + 98051 0.71 0.672702
Target:  5'- aGCACCACCagccCCGG--GCGCUCGgccugGGg -3'
miRNA:   3'- aCGUGGUGGa---GGUCuaCGUGAGCa----CC- -5'
29528 3' -55.4 NC_006151.1 + 22154 0.71 0.687023
Target:  5'- aGCGCCACCaccccgcacggguccUCCAGcggGCGCgUGUGGu -3'
miRNA:   3'- aCGUGGUGG---------------AGGUCua-CGUGaGCACC- -5'
29528 3' -55.4 NC_006151.1 + 123098 0.71 0.693134
Target:  5'- cGgACCGCCUCUcGcgGCGCUCGgcGGc -3'
miRNA:   3'- aCgUGGUGGAGGuCuaCGUGAGCa-CC- -5'
29528 3' -55.4 NC_006151.1 + 97653 0.71 0.693134
Target:  5'- cGCGCCGCCUCCuGGU-CGC-CGcGGg -3'
miRNA:   3'- aCGUGGUGGAGGuCUAcGUGaGCaCC- -5'
29528 3' -55.4 NC_006151.1 + 122670 0.7 0.703277
Target:  5'- aGCGCCGCg-CCgAGGUGCGCgcggcggcCGUGGa -3'
miRNA:   3'- aCGUGGUGgaGG-UCUACGUGa-------GCACC- -5'
29528 3' -55.4 NC_006151.1 + 49708 0.7 0.703277
Target:  5'- cGCACCcCCUCCccgGGAggggGUGCUCG-GGa -3'
miRNA:   3'- aCGUGGuGGAGG---UCUa---CGUGAGCaCC- -5'
29528 3' -55.4 NC_006151.1 + 56213 0.7 0.703277
Target:  5'- cGCACCGCCUggcCCuGGUGCGCccCGaGGa -3'
miRNA:   3'- aCGUGGUGGA---GGuCUACGUGa-GCaCC- -5'
29528 3' -55.4 NC_006151.1 + 70780 0.7 0.723369
Target:  5'- cGCGCgCGCCUCCg---GCACcggCGUGGc -3'
miRNA:   3'- aCGUG-GUGGAGGucuaCGUGa--GCACC- -5'
29528 3' -55.4 NC_006151.1 + 95679 0.7 0.733301
Target:  5'- cGCGCuCGCCgUCCAGGUGcCGCUgGUa- -3'
miRNA:   3'- aCGUG-GUGG-AGGUCUAC-GUGAgCAcc -5'
29528 3' -55.4 NC_006151.1 + 13385 0.7 0.743143
Target:  5'- gGCAcCCGCCUCCGGGgacGCGC-CGgccaaugGGg -3'
miRNA:   3'- aCGU-GGUGGAGGUCUa--CGUGaGCa------CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.