miRNA display CGI


Results 41 - 60 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29528 5' -67.5 NC_006151.1 + 3264 0.67 0.360241
Target:  5'- gGCGCCGCgg-CGCGCGGcgaugugcgccaGGGCGg-- -3'
miRNA:   3'- gCGCGGCGggaGCGCGCC------------CCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 117728 0.67 0.360241
Target:  5'- cCGCGCCGCCaUCGCucgucccacGCGGaGGuGCGa-- -3'
miRNA:   3'- -GCGCGGCGGgAGCG---------CGCC-CC-CGCaca -5'
29528 5' -67.5 NC_006151.1 + 100383 0.67 0.357299
Target:  5'- cCGCGCCGaggucaacacgcaCCgCUCGgacaugcgcgccgaCGCGGGGGCGcUGc -3'
miRNA:   3'- -GCGCGGC-------------GG-GAGC--------------GCGCCCCCGC-ACa -5'
29528 5' -67.5 NC_006151.1 + 50360 0.67 0.352918
Target:  5'- -cCGCCGCgUCUcCGCcgGCGGGGGCGa-- -3'
miRNA:   3'- gcGCGGCG-GGA-GCG--CGCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 64185 0.67 0.352191
Target:  5'- cCGuCGCCGCCCgcgaUCGCccCGGGcagguccGGCGUGg -3'
miRNA:   3'- -GC-GCGGCGGG----AGCGc-GCCC-------CCGCACa -5'
29528 5' -67.5 NC_006151.1 + 50008 0.67 0.352191
Target:  5'- gCGCGCCGCgcgcgcggCC-CGCGCGGcgcccccGGGCGcGg -3'
miRNA:   3'- -GCGCGGCG--------GGaGCGCGCC-------CCCGCaCa -5'
29528 5' -67.5 NC_006151.1 + 3446 0.67 0.345701
Target:  5'- --aGCCGCCgUCGgGCGcGGGGUGc-- -3'
miRNA:   3'- gcgCGGCGGgAGCgCGC-CCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 85622 0.67 0.345701
Target:  5'- aCGCGCCGCCgC-CGCGCGgcgccagcGGGGaCGc-- -3'
miRNA:   3'- -GCGCGGCGG-GaGCGCGC--------CCCC-GCaca -5'
29528 5' -67.5 NC_006151.1 + 89155 0.67 0.345701
Target:  5'- cCGCGCC-CgCCUCgggcgaggcggGCGCGGGGGuCGg-- -3'
miRNA:   3'- -GCGCGGcG-GGAG-----------CGCGCCCCC-GCaca -5'
29528 5' -67.5 NC_006151.1 + 118339 0.67 0.344985
Target:  5'- cCGCGcCCGCCCucUCGCGCGccugcgaGGcGGCGc-- -3'
miRNA:   3'- -GCGC-GGCGGG--AGCGCGC-------CC-CCGCaca -5'
29528 5' -67.5 NC_006151.1 + 101765 0.67 0.33859
Target:  5'- cCGCGCCGCCgaCGCGgGgccccGGGGCc--- -3'
miRNA:   3'- -GCGCGGCGGgaGCGCgC-----CCCCGcaca -5'
29528 5' -67.5 NC_006151.1 + 67945 0.67 0.33859
Target:  5'- cCGCG-CGCCCaccaCGCGcCGGGGGCc--- -3'
miRNA:   3'- -GCGCgGCGGGa---GCGC-GCCCCCGcaca -5'
29528 5' -67.5 NC_006151.1 + 44380 0.67 0.33859
Target:  5'- uGCGaCgGUCC-CGcCGCGGGGGCGc-- -3'
miRNA:   3'- gCGC-GgCGGGaGC-GCGCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 130403 0.67 0.33859
Target:  5'- aGCGCCucGCCCgcgaGCGCGGGcGCGc-- -3'
miRNA:   3'- gCGCGG--CGGGag--CGCGCCCcCGCaca -5'
29528 5' -67.5 NC_006151.1 + 102688 0.67 0.331587
Target:  5'- aCGCGggggCGCCCg-GCGCGGGcGGCGcGg -3'
miRNA:   3'- -GCGCg---GCGGGagCGCGCCC-CCGCaCa -5'
29528 5' -67.5 NC_006151.1 + 134722 0.67 0.331587
Target:  5'- cCGCGUgGCCUUCGCGCGGGacuuUGUc -3'
miRNA:   3'- -GCGCGgCGGGAGCGCGCCCccgcACA- -5'
29528 5' -67.5 NC_006151.1 + 37866 0.68 0.32469
Target:  5'- cCGCGCCGCggacCCcCGCGCcgGGGaGGCGa-- -3'
miRNA:   3'- -GCGCGGCG----GGaGCGCG--CCC-CCGCaca -5'
29528 5' -67.5 NC_006151.1 + 98631 0.68 0.32469
Target:  5'- uGCGCCGCCUUCGaCGaggcccuGGcGGGCGc-- -3'
miRNA:   3'- gCGCGGCGGGAGC-GCg------CC-CCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 97652 0.68 0.32469
Target:  5'- gCGCGCCGCCUccuggUCGcCGCGGGccacgcaCGUGa -3'
miRNA:   3'- -GCGCGGCGGG-----AGC-GCGCCCcc-----GCACa -5'
29528 5' -67.5 NC_006151.1 + 136848 0.68 0.32469
Target:  5'- gGcCGCCGgCCUCGCGCGcc-GCGUGa -3'
miRNA:   3'- gC-GCGGCgGGAGCGCGCcccCGCACa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.