miRNA display CGI


Results 21 - 40 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29528 5' -67.5 NC_006151.1 + 39773 0.68 0.310557
Target:  5'- gGCGCCGCCUUcgggcacCGCGCggccaaccgcuGGGGGCu--- -3'
miRNA:   3'- gCGCGGCGGGA-------GCGCG-----------CCCCCGcaca -5'
29528 5' -67.5 NC_006151.1 + 40035 0.69 0.279414
Target:  5'- cCGCGCCGCC---GC-CGGGGGCGccGUg -3'
miRNA:   3'- -GCGCGGCGGgagCGcGCCCCCGCa-CA- -5'
29528 5' -67.5 NC_006151.1 + 44380 0.67 0.33859
Target:  5'- uGCGaCgGUCC-CGcCGCGGGGGCGc-- -3'
miRNA:   3'- gCGC-GgCGGGaGC-GCGCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 48939 0.7 0.21862
Target:  5'- gGUGCUGCCCgCGCGCGaGGaCGUGUu -3'
miRNA:   3'- gCGCGGCGGGaGCGCGCcCCcGCACA- -5'
29528 5' -67.5 NC_006151.1 + 50008 0.67 0.352191
Target:  5'- gCGCGCCGCgcgcgcggCC-CGCGCGGcgcccccGGGCGcGg -3'
miRNA:   3'- -GCGCGGCG--------GGaGCGCGCC-------CCCGCaCa -5'
29528 5' -67.5 NC_006151.1 + 50360 0.67 0.352918
Target:  5'- -cCGCCGCgUCUcCGCcgGCGGGGGCGa-- -3'
miRNA:   3'- gcGCGGCG-GGA-GCG--CGCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 52373 0.73 0.150606
Target:  5'- gCGCGCC-CCCggggCcCGCGGGGGCGg-- -3'
miRNA:   3'- -GCGCGGcGGGa---GcGCGCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 52588 0.71 0.181817
Target:  5'- gCGCuGCCGCCCUgCGCGUGGacgaaGGCGUcGUc -3'
miRNA:   3'- -GCG-CGGCGGGA-GCGCGCCc----CCGCA-CA- -5'
29528 5' -67.5 NC_006151.1 + 57116 0.71 0.190028
Target:  5'- gCGCGCCGCCgCgcccggcggUCGCcccugcgcacgcgGCGGGGGCGa-- -3'
miRNA:   3'- -GCGCGGCGG-G---------AGCG-------------CGCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 57260 0.68 0.324006
Target:  5'- cCGCGCgGCCCUCGacggccuCGCGcagcaGGGCGUc- -3'
miRNA:   3'- -GCGCGgCGGGAGC-------GCGCc----CCCGCAca -5'
29528 5' -67.5 NC_006151.1 + 57499 0.66 0.398418
Target:  5'- aCGCGCaCGCgCUCGgcCGCGGcGGCGg-- -3'
miRNA:   3'- -GCGCG-GCGgGAGC--GCGCCcCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 58129 0.66 0.375202
Target:  5'- uCGCGUCGCCCgCGCcguacGCGGccGCGUGc -3'
miRNA:   3'- -GCGCGGCGGGaGCG-----CGCCccCGCACa -5'
29528 5' -67.5 NC_006151.1 + 58330 0.66 0.414399
Target:  5'- gCGCGCCGgCCUC-CGCGuaGGCGc-- -3'
miRNA:   3'- -GCGCGGCgGGAGcGCGCccCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 60089 0.66 0.390578
Target:  5'- gCGCGCCGCCgCgaaCGC-CGGGcGGCa--- -3'
miRNA:   3'- -GCGCGGCGG-Ga--GCGcGCCC-CCGcaca -5'
29528 5' -67.5 NC_006151.1 + 61744 0.75 0.099905
Target:  5'- gGCGCaCGCCCUguaCGCggucGCGGGGGcCGUGg -3'
miRNA:   3'- gCGCG-GCGGGA---GCG----CGCCCCC-GCACa -5'
29528 5' -67.5 NC_006151.1 + 62067 0.66 0.377482
Target:  5'- gCGCGCCGUcgugacgaacgucguCCUCgGCGCGGucggccuGGGCGcGg -3'
miRNA:   3'- -GCGCGGCG---------------GGAG-CGCGCC-------CCCGCaCa -5'
29528 5' -67.5 NC_006151.1 + 64185 0.67 0.352191
Target:  5'- cCGuCGCCGCCCgcgaUCGCccCGGGcagguccGGCGUGg -3'
miRNA:   3'- -GC-GCGGCGGG----AGCGc-GCCC-------CCGCACa -5'
29528 5' -67.5 NC_006151.1 + 64472 0.69 0.259874
Target:  5'- gCGCGCCgccgcggcggggacGCCCgcggGCGCGGGcGGCGg-- -3'
miRNA:   3'- -GCGCGG--------------CGGGag--CGCGCCC-CCGCaca -5'
29528 5' -67.5 NC_006151.1 + 64516 0.74 0.120496
Target:  5'- gCGCGCCGCCaaaggccgccgcggcCGCGuCGGGGGCGg-- -3'
miRNA:   3'- -GCGCGGCGGga-------------GCGC-GCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 64621 0.72 0.161695
Target:  5'- cCGCGCCGCCggC-CGCGGGGcGCGg-- -3'
miRNA:   3'- -GCGCGGCGGgaGcGCGCCCC-CGCaca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.