miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29528 5' -67.5 NC_006151.1 + 3137 0.67 0.367669
Target:  5'- gGCGCggggCGCCCUCG-GCGGGcucGGCGc-- -3'
miRNA:   3'- gCGCG----GCGGGAGCgCGCCC---CCGCaca -5'
29528 5' -67.5 NC_006151.1 + 3264 0.67 0.360241
Target:  5'- gGCGCCGCgg-CGCGCGGcgaugugcgccaGGGCGg-- -3'
miRNA:   3'- gCGCGGCGggaGCGCGCC------------CCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 3446 0.67 0.345701
Target:  5'- --aGCCGCCgUCGgGCGcGGGGUGc-- -3'
miRNA:   3'- gcgCGGCGGgAGCgCGC-CCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 4995 0.67 0.360241
Target:  5'- aGCGgCGCuuCCU-GCGCGGGGGCc--- -3'
miRNA:   3'- gCGCgGCG--GGAgCGCGCCCCCGcaca -5'
29528 5' -67.5 NC_006151.1 + 5238 0.68 0.317901
Target:  5'- aGCGCCGCgCggcggCG-GCGGGGGCc--- -3'
miRNA:   3'- gCGCGGCGgGa----GCgCGCCCCCGcaca -5'
29528 5' -67.5 NC_006151.1 + 7129 0.67 0.37067
Target:  5'- gCGCGCCaauGagauuguccgaaaauCCCUCGCGCGGGcGCGa-- -3'
miRNA:   3'- -GCGCGG---C---------------GGGAGCGCGCCCcCGCaca -5'
29528 5' -67.5 NC_006151.1 + 8127 0.69 0.244728
Target:  5'- gCGCGgaccCCGCCCg-GUGgGGGGGCGgGUg -3'
miRNA:   3'- -GCGC----GGCGGGagCGCgCCCCCGCaCA- -5'
29528 5' -67.5 NC_006151.1 + 9043 0.66 0.390578
Target:  5'- cCGgGgCGCCC-CGCGUgcuccGGGGGCGc-- -3'
miRNA:   3'- -GCgCgGCGGGaGCGCG-----CCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 17094 0.69 0.273372
Target:  5'- gGCGCgCGCCCgucggggCGC-CGGGGGCu--- -3'
miRNA:   3'- gCGCG-GCGGGa------GCGcGCCCCCGcaca -5'
29528 5' -67.5 NC_006151.1 + 20467 0.69 0.279414
Target:  5'- gGCGCCGguccCCCggggggGCGCGGGGGuCGUc- -3'
miRNA:   3'- gCGCGGC----GGGag----CGCGCCCCC-GCAca -5'
29528 5' -67.5 NC_006151.1 + 21320 0.69 0.279414
Target:  5'- gCGCGagaCGCCCggCGCgGCGGGGGUc--- -3'
miRNA:   3'- -GCGCg--GCGGGa-GCG-CGCCCCCGcaca -5'
29528 5' -67.5 NC_006151.1 + 21473 0.69 0.267436
Target:  5'- cCGCGUCGCCggCUCGgGCaggcggccgGGGGGCGcGg -3'
miRNA:   3'- -GCGCGGCGG--GAGCgCG---------CCCCCGCaCa -5'
29528 5' -67.5 NC_006151.1 + 23140 0.66 0.382838
Target:  5'- cCGuCGCCggGCCCUCG-GCGGGagcGGCGg-- -3'
miRNA:   3'- -GC-GCGG--CGGGAGCgCGCCC---CCGCaca -5'
29528 5' -67.5 NC_006151.1 + 27224 0.67 0.367669
Target:  5'- gCGCGCCGUggacgcgcaccuCCUCGgggucggGCGGGGGCccGUa -3'
miRNA:   3'- -GCGCGGCG------------GGAGCg------CGCCCCCGcaCA- -5'
29528 5' -67.5 NC_006151.1 + 27283 0.68 0.317901
Target:  5'- aCGaCGuaGCgCC-CGCGCuugGGGGGCGUGg -3'
miRNA:   3'- -GC-GCggCG-GGaGCGCG---CCCCCGCACa -5'
29528 5' -67.5 NC_006151.1 + 27629 0.68 0.298177
Target:  5'- cCG-GCCGCCCcgaCGgGUGGGGGUGg-- -3'
miRNA:   3'- -GCgCGGCGGGa--GCgCGCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 30665 0.7 0.220618
Target:  5'- cCGCGCUGguuccgggaagccucCCCcggCGgGCGGGGGgGUGUc -3'
miRNA:   3'- -GCGCGGC---------------GGGa--GCgCGCCCCCgCACA- -5'
29528 5' -67.5 NC_006151.1 + 30954 0.66 0.390578
Target:  5'- uCGCgGCgGCCCgggagagCGgGCGGGGGaCGg-- -3'
miRNA:   3'- -GCG-CGgCGGGa------GCgCGCCCCC-GCaca -5'
29528 5' -67.5 NC_006151.1 + 37866 0.68 0.32469
Target:  5'- cCGCGCCGCggacCCcCGCGCcgGGGaGGCGa-- -3'
miRNA:   3'- -GCGCGGCG----GGaGCGCG--CCC-CCGCaca -5'
29528 5' -67.5 NC_006151.1 + 38631 0.72 0.177623
Target:  5'- gGCGCgGCCCUC-CGCGGGGaCGg-- -3'
miRNA:   3'- gCGCGgCGGGAGcGCGCCCCcGCaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.