miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29528 5' -67.5 NC_006151.1 + 133779 0.85 0.017132
Target:  5'- aCGCGCCGCCC-CGCGgGGGaGGCGUGc -3'
miRNA:   3'- -GCGCGGCGGGaGCGCgCCC-CCGCACa -5'
29528 5' -67.5 NC_006151.1 + 127796 0.77 0.07249
Target:  5'- -cCGCCGCCg-CGCGCGGGGGCGcGa -3'
miRNA:   3'- gcGCGGCGGgaGCGCGCCCCCGCaCa -5'
29528 5' -67.5 NC_006151.1 + 116926 0.77 0.078092
Target:  5'- aCGgGCCGUCCUCGuCGCGggccagguugaGGGGCGUGc -3'
miRNA:   3'- -GCgCGGCGGGAGC-GCGC-----------CCCCGCACa -5'
29528 5' -67.5 NC_006151.1 + 116321 0.75 0.095125
Target:  5'- uGaCGCCGCgCUCGCGCGGGcccgcGGCGUaGUa -3'
miRNA:   3'- gC-GCGGCGgGAGCGCGCCC-----CCGCA-CA- -5'
29528 5' -67.5 NC_006151.1 + 61744 0.75 0.099905
Target:  5'- gGCGCaCGCCCUguaCGCggucGCGGGGGcCGUGg -3'
miRNA:   3'- gCGCG-GCGGGA---GCG----CGCCCCC-GCACa -5'
29528 5' -67.5 NC_006151.1 + 139287 0.74 0.11015
Target:  5'- aCGCGCCGCCCUCG-GCGucugcGGcGCGUGc -3'
miRNA:   3'- -GCGCGGCGGGAGCgCGCc----CC-CGCACa -5'
29528 5' -67.5 NC_006151.1 + 64516 0.74 0.120496
Target:  5'- gCGCGCCGCCaaaggccgccgcggcCGCGuCGGGGGCGg-- -3'
miRNA:   3'- -GCGCGGCGGga-------------GCGC-GCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 122670 0.73 0.133652
Target:  5'- aGCGCCGCgCCgaggugCGCGCGGcGGcCGUGg -3'
miRNA:   3'- gCGCGGCG-GGa-----GCGCGCCcCC-GCACa -5'
29528 5' -67.5 NC_006151.1 + 96862 0.73 0.136896
Target:  5'- cCGCGcCCGCCgggcgcggcgCGCGCGGGGGCaUGa -3'
miRNA:   3'- -GCGC-GGCGGga--------GCGCGCCCCCGcACa -5'
29528 5' -67.5 NC_006151.1 + 52373 0.73 0.150606
Target:  5'- gCGCGCC-CCCggggCcCGCGGGGGCGg-- -3'
miRNA:   3'- -GCGCGGcGGGa---GcGCGCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 64621 0.72 0.161695
Target:  5'- cCGCGCCGCCggC-CGCGGGGcGCGg-- -3'
miRNA:   3'- -GCGCGGCGGgaGcGCGCCCC-CGCaca -5'
29528 5' -67.5 NC_006151.1 + 38631 0.72 0.177623
Target:  5'- gGCGCgGCCCUC-CGCGGGGaCGg-- -3'
miRNA:   3'- gCGCGgCGGGAGcGCGCCCCcGCaca -5'
29528 5' -67.5 NC_006151.1 + 135076 0.71 0.181817
Target:  5'- -cCGCC-UCCUCGgGCGGGGGCGg-- -3'
miRNA:   3'- gcGCGGcGGGAGCgCGCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 67824 0.71 0.181817
Target:  5'- uGcCGCCGUCgUCGuCGCGGGGGCu--- -3'
miRNA:   3'- gC-GCGGCGGgAGC-GCGCCCCCGcaca -5'
29528 5' -67.5 NC_006151.1 + 52588 0.71 0.181817
Target:  5'- gCGCuGCCGCCCUgCGCGUGGacgaaGGCGUcGUc -3'
miRNA:   3'- -GCG-CGGCGGGA-GCGCGCCc----CCGCA-CA- -5'
29528 5' -67.5 NC_006151.1 + 57116 0.71 0.190028
Target:  5'- gCGCGCCGCCgCgcccggcggUCGCcccugcgcacgcgGCGGGGGCGa-- -3'
miRNA:   3'- -GCGCGGCGG-G---------AGCG-------------CGCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 97275 0.71 0.19493
Target:  5'- aCGgGCaGCgCCUCG-GCGGcGGGCGUGUu -3'
miRNA:   3'- -GCgCGgCG-GGAGCgCGCC-CCCGCACA- -5'
29528 5' -67.5 NC_006151.1 + 139809 0.71 0.19493
Target:  5'- gCGCGCCGCCgUcuccgcgacgcaCGCGCGGGucGGCGcGa -3'
miRNA:   3'- -GCGCGGCGGgA------------GCGCGCCC--CCGCaCa -5'
29528 5' -67.5 NC_006151.1 + 121830 0.71 0.19493
Target:  5'- uGUGCCGCuaCCUCGCGCGGcGGCu--- -3'
miRNA:   3'- gCGCGGCG--GGAGCGCGCCcCCGcaca -5'
29528 5' -67.5 NC_006151.1 + 97494 0.71 0.199481
Target:  5'- aCGCGCaGCgCCUCGCgGCGGuGGcgcuGCGUGUa -3'
miRNA:   3'- -GCGCGgCG-GGAGCG-CGCC-CC----CGCACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.