miRNA display CGI


Results 41 - 60 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29529 3' -59.2 NC_006151.1 + 31769 0.67 0.765471
Target:  5'- cGGCGG-GCGCGc--GCcGGGCGGCu -3'
miRNA:   3'- cCUGCCaCGCGCacaUGcUCCGCCGc -5'
29529 3' -59.2 NC_006151.1 + 103770 0.67 0.765471
Target:  5'- cGGCGcUGCGCGaGUcggaGCGcuGGCGGCGc -3'
miRNA:   3'- cCUGCcACGCGCaCA----UGCu-CCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 30923 0.67 0.761797
Target:  5'- cGGGCGGcccGCGCGgaucgcccgcgcgGUAuCGcGGCGGCc -3'
miRNA:   3'- -CCUGCCa--CGCGCa------------CAU-GCuCCGCCGc -5'
29529 3' -59.2 NC_006151.1 + 127807 0.67 0.759954
Target:  5'- -cGCGGggGCGCGagGUccuugcgguucacguACGuGGCGGCGu -3'
miRNA:   3'- ccUGCCa-CGCGCa-CA---------------UGCuCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 14474 0.67 0.756254
Target:  5'- uGGGCGGguggGCGgGUGgGCGGGGguCGGg- -3'
miRNA:   3'- -CCUGCCa---CGCgCACaUGCUCC--GCCgc -5'
29529 3' -59.2 NC_006151.1 + 56586 0.67 0.756254
Target:  5'- cGACGGgcugGUGCGgacGCGccccGGCGGCGc -3'
miRNA:   3'- cCUGCCa---CGCGCacaUGCu---CCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 64488 0.67 0.756254
Target:  5'- gGGACGcc-CGCGg--GCGcGGGCGGCGg -3'
miRNA:   3'- -CCUGCcacGCGCacaUGC-UCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 54090 0.67 0.756254
Target:  5'- cGGCGGcgGCgGCGgccaugucgGcUGCGAcGGCGGCGg -3'
miRNA:   3'- cCUGCCa-CG-CGCa--------C-AUGCU-CCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 33302 0.67 0.753469
Target:  5'- gGGGCGcGcGCGCGUGggACcgggaccgggacagGGGGCGGgGg -3'
miRNA:   3'- -CCUGC-CaCGCGCACa-UG--------------CUCCGCCgC- -5'
29529 3' -59.2 NC_006151.1 + 3076 0.67 0.746934
Target:  5'- aGGCGGUGgGCGa-----AGGCGGCGa -3'
miRNA:   3'- cCUGCCACgCGCacaugcUCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 71757 0.67 0.746934
Target:  5'- -aGCGccGCGCGUGguccUGCGGcagcGGCGGCGg -3'
miRNA:   3'- ccUGCcaCGCGCAC----AUGCU----CCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 78641 0.67 0.746934
Target:  5'- cGACGcGUGCGagcugGUG-GAGGCGGCc -3'
miRNA:   3'- cCUGC-CACGCgca--CAUgCUCCGCCGc -5'
29529 3' -59.2 NC_006151.1 + 125578 0.67 0.746934
Target:  5'- -----aUGCGCGUGcccgGCGAGcGCGGCa -3'
miRNA:   3'- ccugccACGCGCACa---UGCUC-CGCCGc -5'
29529 3' -59.2 NC_006151.1 + 130923 0.67 0.746934
Target:  5'- uGGcCGGgccCGCGgggGCgGGGGCGGCGg -3'
miRNA:   3'- -CCuGCCac-GCGCacaUG-CUCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 141740 0.67 0.746934
Target:  5'- aGGGCGGagggGCGCGgg-GCGcgcgccccGGUGGCGu -3'
miRNA:   3'- -CCUGCCa---CGCGCacaUGCu-------CCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 120245 0.67 0.746934
Target:  5'- gGGACcuGGcGCGCGUGagcuuCGAGGUGcuGCGg -3'
miRNA:   3'- -CCUG--CCaCGCGCACau---GCUCCGC--CGC- -5'
29529 3' -59.2 NC_006151.1 + 121307 0.67 0.73752
Target:  5'- cGACGG-GCGCuGgagcGUG-GAGGCGGCc -3'
miRNA:   3'- cCUGCCaCGCG-Ca---CAUgCUCCGCCGc -5'
29529 3' -59.2 NC_006151.1 + 30740 0.67 0.73752
Target:  5'- cGGGCccggaGUGcCGCGg--GCGGGGCGGgGg -3'
miRNA:   3'- -CCUGc----CAC-GCGCacaUGCUCCGCCgC- -5'
29529 3' -59.2 NC_006151.1 + 105505 0.67 0.73752
Target:  5'- aGGAC-GUGCGCGagcuCGAccgcauGGCGGCGc -3'
miRNA:   3'- -CCUGcCACGCGCacauGCU------CCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 29403 0.67 0.73752
Target:  5'- aGGCGGgaccGCGCGgagaaggcucggUGUggccGCGggGGGCGGCGg -3'
miRNA:   3'- cCUGCCa---CGCGC------------ACA----UGC--UCCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.