miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29529 3' -59.2 NC_006151.1 + 91681 0.86 0.06335
Target:  5'- cGGGUGGUGCGCGUGggUGGGGUGGCGg -3'
miRNA:   3'- -CCUGCCACGCGCACauGCUCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 125534 0.82 0.111644
Target:  5'- -cGCGGUGCGUGgagGUGCGcGGCGGCGu -3'
miRNA:   3'- ccUGCCACGCGCa--CAUGCuCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 30086 0.81 0.140037
Target:  5'- aGACGGaUGUa-GUGUACGAGGCGGCGa -3'
miRNA:   3'- cCUGCC-ACGcgCACAUGCUCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 23010 0.78 0.202277
Target:  5'- gGGugGGgGCGCGgggGUGgugGAGGCGGCGa -3'
miRNA:   3'- -CCugCCaCGCGCa--CAUg--CUCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 44921 0.78 0.219384
Target:  5'- gGGGCGuGUGCGCGUaaaGUGCGAGGCccacucgacccccccGGCu -3'
miRNA:   3'- -CCUGC-CACGCGCA---CAUGCUCCG---------------CCGc -5'
29529 3' -59.2 NC_006151.1 + 98949 0.78 0.222528
Target:  5'- aGGCGGcGCGggcCGUGgACGAGGCGGCGc -3'
miRNA:   3'- cCUGCCaCGC---GCACaUGCUCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 90646 0.78 0.222528
Target:  5'- uGGCGaUGgGCGUGUacaugcGCGGGGCGGCGg -3'
miRNA:   3'- cCUGCcACgCGCACA------UGCUCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 113028 0.77 0.256115
Target:  5'- cGACGcGUGCGCcggGUGcUGCGcGGCGGCGg -3'
miRNA:   3'- cCUGC-CACGCG---CAC-AUGCuCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 42775 0.76 0.2682
Target:  5'- cGGGgGGUGgGaCGUGacuggGCGGGGUGGCGg -3'
miRNA:   3'- -CCUgCCACgC-GCACa----UGCUCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 11806 0.76 0.2682
Target:  5'- gGGGCGGgGUGgG-GUGgGGGGCGGCGg -3'
miRNA:   3'- -CCUGCCaCGCgCaCAUgCUCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 99192 0.76 0.274413
Target:  5'- uGGACGccacGgGCGUGUGgGAGGCGGUGc -3'
miRNA:   3'- -CCUGCca--CgCGCACAUgCUCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 122322 0.76 0.287185
Target:  5'- uGGCGGUGCGCGUGgacccCGAGGacguGGCc -3'
miRNA:   3'- cCUGCCACGCGCACau---GCUCCg---CCGc -5'
29529 3' -59.2 NC_006151.1 + 31562 0.75 0.307212
Target:  5'- -cGCGGUGCGCGaacGUgaucACGGGGgGGCGg -3'
miRNA:   3'- ccUGCCACGCGCa--CA----UGCUCCgCCGC- -5'
29529 3' -59.2 NC_006151.1 + 113694 0.74 0.350417
Target:  5'- cGAgGG-GCGCGUGUGCGGGGagcuguggacccUGGCGu -3'
miRNA:   3'- cCUgCCaCGCGCACAUGCUCC------------GCCGC- -5'
29529 3' -59.2 NC_006151.1 + 30614 0.74 0.358025
Target:  5'- cGGGCGGUcggcguGCGCGcUGUGCGgguGGGUGGgGg -3'
miRNA:   3'- -CCUGCCA------CGCGC-ACAUGC---UCCGCCgC- -5'
29529 3' -59.2 NC_006151.1 + 84397 0.74 0.358025
Target:  5'- cGGGCGGggaGCGgGUGgGCGcggugauaAGGCGGCGc -3'
miRNA:   3'- -CCUGCCa--CGCgCACaUGC--------UCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 4326 0.74 0.373585
Target:  5'- cGGcCGGgcUGCGCGgcgGCGaAGGCGGCGc -3'
miRNA:   3'- -CCuGCC--ACGCGCacaUGC-UCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 101198 0.73 0.392853
Target:  5'- uGGACGcGUGCcugcgcgagggccagGCGUGgACGGGGCccGGCGg -3'
miRNA:   3'- -CCUGC-CACG---------------CGCACaUGCUCCG--CCGC- -5'
29529 3' -59.2 NC_006151.1 + 99559 0.73 0.39777
Target:  5'- gGGcGCGGcGCGCGcggcgcugcUGcGCGAGGUGGCGg -3'
miRNA:   3'- -CC-UGCCaCGCGC---------ACaUGCUCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 100457 0.73 0.39777
Target:  5'- cGACGGaggcgcUGCGCGaGUGCGAGGCgcugggccugcaGGCGc -3'
miRNA:   3'- cCUGCC------ACGCGCaCAUGCUCCG------------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.