miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29529 3' -59.2 NC_006151.1 + 2475 0.69 0.649916
Target:  5'- -aGCGGUuggccGCGCG-GUGCccgaAGGCGGCGc -3'
miRNA:   3'- ccUGCCA-----CGCGCaCAUGc---UCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 3076 0.67 0.746934
Target:  5'- aGGCGGUGgGCGa-----AGGCGGCGa -3'
miRNA:   3'- cCUGCCACgCGCacaugcUCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 3269 0.71 0.522626
Target:  5'- -cGCGGcGCGCGgcgaUGUGCGccaGGGCGGCc -3'
miRNA:   3'- ccUGCCaCGCGC----ACAUGC---UCCGCCGc -5'
29529 3' -59.2 NC_006151.1 + 4215 0.68 0.67952
Target:  5'- aGGGCGGccgggGCGCGg--GCGGGcGCGGgCa -3'
miRNA:   3'- -CCUGCCa----CGCGCacaUGCUC-CGCC-Gc -5'
29529 3' -59.2 NC_006151.1 + 4326 0.74 0.373585
Target:  5'- cGGcCGGgcUGCGCGgcgGCGaAGGCGGCGc -3'
miRNA:   3'- -CCuGCC--ACGCGCacaUGC-UCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 5116 0.67 0.718442
Target:  5'- uGGCGGcccgGCGCGg--GCGAGuGgGGCGc -3'
miRNA:   3'- cCUGCCa---CGCGCacaUGCUC-CgCCGC- -5'
29529 3' -59.2 NC_006151.1 + 6117 0.7 0.562123
Target:  5'- aGGACGGgGCGgccuCGUGgcuccggccgcggccGCGAGGaCGGCGg -3'
miRNA:   3'- -CCUGCCaCGC----GCACa--------------UGCUCC-GCCGC- -5'
29529 3' -59.2 NC_006151.1 + 6400 0.68 0.659808
Target:  5'- cGGGCGccgaGCGCGgagaGCG-GGCGGCGg -3'
miRNA:   3'- -CCUGCca--CGCGCaca-UGCuCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 8080 0.66 0.801147
Target:  5'- cGACGG-G-GCGUG-GCGGGGCguGGCa -3'
miRNA:   3'- cCUGCCaCgCGCACaUGCUCCG--CCGc -5'
29529 3' -59.2 NC_006151.1 + 8141 0.69 0.640012
Target:  5'- cGGugGGgggGCGgGUGcaaaGGGGCGGgGc -3'
miRNA:   3'- -CCugCCa--CGCgCACaug-CUCCGCCgC- -5'
29529 3' -59.2 NC_006151.1 + 8611 0.69 0.600407
Target:  5'- gGGGcCGGUGCGgGUGUgaggguccuguGCGGGuGuCGGUGg -3'
miRNA:   3'- -CCU-GCCACGCgCACA-----------UGCUC-C-GCCGC- -5'
29529 3' -59.2 NC_006151.1 + 10420 0.68 0.67952
Target:  5'- uGACGccGCGgGUGggcCGAGGCcGGCGg -3'
miRNA:   3'- cCUGCcaCGCgCACau-GCUCCG-CCGC- -5'
29529 3' -59.2 NC_006151.1 + 10941 0.69 0.607324
Target:  5'- gGGugGGcGCGCGUGUccgugugagaguuuACGGuGUGGUGg -3'
miRNA:   3'- -CCugCCaCGCGCACA--------------UGCUcCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 11806 0.76 0.2682
Target:  5'- gGGGCGGgGUGgG-GUGgGGGGCGGCGg -3'
miRNA:   3'- -CCUGCCaCGCgCaCAUgCUCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 14048 0.69 0.630101
Target:  5'- cGACGGgGCGauaaaGggGUGCGuGGCGGCc -3'
miRNA:   3'- cCUGCCaCGCg----Ca-CAUGCuCCGCCGc -5'
29529 3' -59.2 NC_006151.1 + 14474 0.67 0.756254
Target:  5'- uGGGCGGguggGCGgGUGgGCGGGGguCGGg- -3'
miRNA:   3'- -CCUGCCa---CGCgCACaUGCUCC--GCCgc -5'
29529 3' -59.2 NC_006151.1 + 15033 0.69 0.599419
Target:  5'- aGGA-GGUGCGCGUccacggcGcGCGGGGCcccGGCGc -3'
miRNA:   3'- -CCUgCCACGCGCA-------CaUGCUCCG---CCGC- -5'
29529 3' -59.2 NC_006151.1 + 15564 0.68 0.699087
Target:  5'- aGGACGGggaGaCGgaCGUGUACGAGGaGGaCGa -3'
miRNA:   3'- -CCUGCCa--C-GC--GCACAUGCUCCgCC-GC- -5'
29529 3' -59.2 NC_006151.1 + 17127 0.71 0.522626
Target:  5'- cGGCGGUGCuGCGg----GAGGCGGCc -3'
miRNA:   3'- cCUGCCACG-CGCacaugCUCCGCCGc -5'
29529 3' -59.2 NC_006151.1 + 17397 0.71 0.532169
Target:  5'- cGACGGgGCGCGUG-GCGc-GCGGCa -3'
miRNA:   3'- cCUGCCaCGCGCACaUGCucCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.