Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 42792 | 0.67 | 0.766115 |
Target: 5'- cUGgGCGGGGUggcgGGACGCG-UCGAg -3' miRNA: 3'- -AUgCGCCUCGaguaCCUGCGCgAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 48948 | 0.66 | 0.820111 |
Target: 5'- cGCGCGcGAGgaCGuguucgccUGGACGCGcCUCa- -3' miRNA: 3'- aUGCGC-CUCgaGU--------ACCUGCGC-GAGcu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 52964 | 0.66 | 0.793762 |
Target: 5'- gUGCGCGuGcaggcGGCUCAUGuACGCGCU-GAc -3' miRNA: 3'- -AUGCGC-C-----UCGAGUACcUGCGCGAgCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 53994 | 0.76 | 0.271683 |
Target: 5'- -uCGCGGcgAGCUCccGGACGCGCUCc- -3' miRNA: 3'- auGCGCC--UCGAGuaCCUGCGCGAGcu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 55831 | 0.66 | 0.811487 |
Target: 5'- gGCGUGGuGUUUAagaaGACGCGcCUCGAg -3' miRNA: 3'- aUGCGCCuCGAGUac--CUGCGC-GAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 58856 | 0.75 | 0.312225 |
Target: 5'- cGCGUGGAGCUCGcccGGCGCGC-CGGg -3' miRNA: 3'- aUGCGCCUCGAGUac-CUGCGCGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 66554 | 0.69 | 0.637178 |
Target: 5'- cGCGCGGccGCgccgcCGUGGACccgGCGCUCGc -3' miRNA: 3'- aUGCGCCu-CGa----GUACCUG---CGCGAGCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 71203 | 0.71 | 0.487959 |
Target: 5'- -uCGCaGGAGCUCguguccgugaccGUGGGCGCGCgcgcCGAc -3' miRNA: 3'- auGCG-CCUCGAG------------UACCUGCGCGa---GCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 73058 | 0.7 | 0.586379 |
Target: 5'- gUGCGCGGGGUccgCGUGGcUGUGgUCGAa -3' miRNA: 3'- -AUGCGCCUCGa--GUACCuGCGCgAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 74446 | 0.69 | 0.637178 |
Target: 5'- gACGCGcAGCUCcgGcAgGCGCUCGGc -3' miRNA: 3'- aUGCGCcUCGAGuaCcUgCGCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 75393 | 0.67 | 0.756652 |
Target: 5'- gGCGCGGGGCg---GGuGCGUGCgCGGg -3' miRNA: 3'- aUGCGCCUCGaguaCC-UGCGCGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 77626 | 0.73 | 0.406521 |
Target: 5'- cGCGCGGAGC---UGGACGUGUaCGAc -3' miRNA: 3'- aUGCGCCUCGaguACCUGCGCGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 78644 | 0.67 | 0.7178 |
Target: 5'- cGCGUGcGAGCUgGUGGAgGCgGC-CGGg -3' miRNA: 3'- aUGCGC-CUCGAgUACCUgCG-CGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 78671 | 0.67 | 0.766115 |
Target: 5'- gGCGCGGGuGC---UGGACGgGCUCu- -3' miRNA: 3'- aUGCGCCU-CGaguACCUGCgCGAGcu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 78812 | 0.66 | 0.802701 |
Target: 5'- -cCGCGGGGCccaguaccuguuUCAgcuguuUGGGCGCGCcUGAc -3' miRNA: 3'- auGCGCCUCG------------AGU------ACCUGCGCGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 81521 | 0.68 | 0.697903 |
Target: 5'- -cCGCGuGAGCUCGgcggccgcgGcGGCGCGCUCc- -3' miRNA: 3'- auGCGC-CUCGAGUa--------C-CUGCGCGAGcu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 81752 | 0.86 | 0.06577 |
Target: 5'- gGCGCGGAGCUgguccgcgggcgccaCcgGGACGCGCUCGGc -3' miRNA: 3'- aUGCGCCUCGA---------------GuaCCUGCGCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 83148 | 0.66 | 0.814956 |
Target: 5'- cGCGCcaaagaggguguccuGGAGCUCggGGucguCGCGCgggCGGc -3' miRNA: 3'- aUGCG---------------CCUCGAGuaCCu---GCGCGa--GCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 84253 | 0.69 | 0.647356 |
Target: 5'- --aGCGGAGC--AUGcGCGUGCUCGAc -3' miRNA: 3'- augCGCCUCGagUACcUGCGCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 84399 | 0.69 | 0.60665 |
Target: 5'- gGCGgGGAGCggGUGGGCGCGg-UGAu -3' miRNA: 3'- aUGCgCCUCGagUACCUGCGCgaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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