miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29529 5' -58.1 NC_006151.1 + 2779 0.69 0.60665
Target:  5'- cGCGCGGAGCUCGcggcacccGGGCcaGCGCaCGGc -3'
miRNA:   3'- aUGCGCCUCGAGUa-------CCUG--CGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 3137 0.7 0.556235
Target:  5'- gGCGCGGGGCgcccucGGCGgGCUCGGc -3'
miRNA:   3'- aUGCGCCUCGaguac-CUGCgCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 3457 0.68 0.677787
Target:  5'- gGCGCGGGGUgcucgggCAUGGGCccgagcggGCGC-CGGa -3'
miRNA:   3'- aUGCGCCUCGa------GUACCUG--------CGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 4245 0.67 0.7178
Target:  5'- aGC-CGGAGCgggCA-GGGCagcagGCGCUCGAg -3'
miRNA:   3'- aUGcGCCUCGa--GUaCCUG-----CGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 4486 0.7 0.566239
Target:  5'- --aGCGGcGGCUCAUGGccACGgCGCUCa- -3'
miRNA:   3'- augCGCC-UCGAGUACC--UGC-GCGAGcu -5'
29529 5' -58.1 NC_006151.1 + 4611 0.67 0.7178
Target:  5'- -cCGUGGGGCgCGUGGACccgGCGCUgGc -3'
miRNA:   3'- auGCGCCUCGaGUACCUG---CGCGAgCu -5'
29529 5' -58.1 NC_006151.1 + 17395 0.66 0.784679
Target:  5'- cACGaCGGGGCgCGUGG-CGCGCg--- -3'
miRNA:   3'- aUGC-GCCUCGaGUACCuGCGCGagcu -5'
29529 5' -58.1 NC_006151.1 + 19266 0.75 0.29822
Target:  5'- --aGCGGGGCUCGUGG-CGCGCggGGc -3'
miRNA:   3'- augCGCCUCGAGUACCuGCGCGagCU- -5'
29529 5' -58.1 NC_006151.1 + 20122 0.67 0.756652
Target:  5'- gGCGaCGGGGCUgGgGGGCGgGCgccgCGGg -3'
miRNA:   3'- aUGC-GCCUCGAgUaCCUGCgCGa---GCU- -5'
29529 5' -58.1 NC_006151.1 + 20320 0.68 0.677787
Target:  5'- gUugGCGGcGGCgagCA-GGACGCGCgacaCGAc -3'
miRNA:   3'- -AugCGCC-UCGa--GUaCCUGCGCGa---GCU- -5'
29529 5' -58.1 NC_006151.1 + 20451 0.75 0.29822
Target:  5'- --aGCGGGGCUCGggGGugGCGC-CGGu -3'
miRNA:   3'- augCGCCUCGAGUa-CCugCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 20486 0.68 0.687868
Target:  5'- gGCGCGGGGgUCGUcGGCGgcucugGCUCGAu -3'
miRNA:   3'- aUGCGCCUCgAGUAcCUGCg-----CGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 21504 0.74 0.357196
Target:  5'- gGCGCGG-GCgUCAccgGGGCGgGCUCGGg -3'
miRNA:   3'- aUGCGCCuCG-AGUa--CCUGCgCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 23017 0.7 0.576289
Target:  5'- gGCGCGGGGgUgGUGGAgGCGg-CGAa -3'
miRNA:   3'- aUGCGCCUCgAgUACCUgCGCgaGCU- -5'
29529 5' -58.1 NC_006151.1 + 25111 0.72 0.459907
Target:  5'- cUGCGUGcGAGCgcugggCGUGGACGCGCg--- -3'
miRNA:   3'- -AUGCGC-CUCGa-----GUACCUGCGCGagcu -5'
29529 5' -58.1 NC_006151.1 + 27210 0.69 0.616817
Target:  5'- gGCGcCGGGGCcccgcgcgcCGUGGACGCGCaccuccUCGGg -3'
miRNA:   3'- aUGC-GCCUCGa--------GUACCUGCGCG------AGCU- -5'
29529 5' -58.1 NC_006151.1 + 27451 0.67 0.737408
Target:  5'- gACGCGGuGGgUCggGGGCGgGCggUCGAg -3'
miRNA:   3'- aUGCGCC-UCgAGuaCCUGCgCG--AGCU- -5'
29529 5' -58.1 NC_006151.1 + 28112 0.76 0.271683
Target:  5'- gGCGCGGcuccucgucGGCUCG-GGGCGCGCUCc- -3'
miRNA:   3'- aUGCGCC---------UCGAGUaCCUGCGCGAGcu -5'
29529 5' -58.1 NC_006151.1 + 29459 0.68 0.677787
Target:  5'- gACGCGGAGggagcGGGCGCGC-CGGg -3'
miRNA:   3'- aUGCGCCUCgaguaCCUGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 33945 0.66 0.793762
Target:  5'- cGCGCcccgGGGGCUCGgggcgGGACGCgGCgcccgcgCGGg -3'
miRNA:   3'- aUGCG----CCUCGAGUa----CCUGCG-CGa------GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.