miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29529 5' -58.1 NC_006151.1 + 81752 0.86 0.06577
Target:  5'- gGCGCGGAGCUgguccgcgggcgccaCcgGGACGCGCUCGGc -3'
miRNA:   3'- aUGCGCCUCGA---------------GuaCCUGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 104781 0.83 0.09947
Target:  5'- gUACGCGGAGC-CAUGcGCGCGCUCGu -3'
miRNA:   3'- -AUGCGCCUCGaGUACcUGCGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 122513 0.8 0.154415
Target:  5'- cGCGCGGAcgcGCUCcUGGACGCGCaCGAc -3'
miRNA:   3'- aUGCGCCU---CGAGuACCUGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 138144 0.79 0.188849
Target:  5'- gACGCGGAGgaCcgGcGCGCGCUCGAg -3'
miRNA:   3'- aUGCGCCUCgaGuaCcUGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 100228 0.77 0.229857
Target:  5'- gGCGCcguggccGAGCgCGUGGugGCGCUCGAg -3'
miRNA:   3'- aUGCGc------CUCGaGUACCugCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 28112 0.76 0.271683
Target:  5'- gGCGCGGcuccucgucGGCUCG-GGGCGCGCUCc- -3'
miRNA:   3'- aUGCGCC---------UCGAGUaCCUGCGCGAGcu -5'
29529 5' -58.1 NC_006151.1 + 53994 0.76 0.271683
Target:  5'- -uCGCGGcgAGCUCccGGACGCGCUCc- -3'
miRNA:   3'- auGCGCC--UCGAGuaCCUGCGCGAGcu -5'
29529 5' -58.1 NC_006151.1 + 98364 0.76 0.278135
Target:  5'- gUGCGCGG-GCUC-UGGGCGCGCgCGc -3'
miRNA:   3'- -AUGCGCCuCGAGuACCUGCGCGaGCu -5'
29529 5' -58.1 NC_006151.1 + 19266 0.75 0.29822
Target:  5'- --aGCGGGGCUCGUGG-CGCGCggGGc -3'
miRNA:   3'- augCGCCUCGAGUACCuGCGCGagCU- -5'
29529 5' -58.1 NC_006151.1 + 20451 0.75 0.29822
Target:  5'- --aGCGGGGCUCGggGGugGCGC-CGGu -3'
miRNA:   3'- augCGCCUCGAGUa-CCugCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 137317 0.75 0.305161
Target:  5'- cGCGCGGuGCUC---GACGCGCUCGc -3'
miRNA:   3'- aUGCGCCuCGAGuacCUGCGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 58856 0.75 0.312225
Target:  5'- cGCGUGGAGCUCGcccGGCGCGC-CGGg -3'
miRNA:   3'- aUGCGCCUCGAGUac-CUGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 130309 0.75 0.326723
Target:  5'- gGCGCGGAGCgcgCGcgccGCGCGCUCGGg -3'
miRNA:   3'- aUGCGCCUCGa--GUacc-UGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 102416 0.75 0.326723
Target:  5'- cGCGCGGcccgcgaacgaGGC-CAugcaccgggcgcUGGACGCGCUCGAg -3'
miRNA:   3'- aUGCGCC-----------UCGaGU------------ACCUGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 120798 0.75 0.329682
Target:  5'- gACGCGGAGCgCGccgcgcgcgaggugcUGGACGCGCcgcgCGAc -3'
miRNA:   3'- aUGCGCCUCGaGU---------------ACCUGCGCGa---GCU- -5'
29529 5' -58.1 NC_006151.1 + 21504 0.74 0.357196
Target:  5'- gGCGCGG-GCgUCAccgGGGCGgGCUCGGg -3'
miRNA:   3'- aUGCGCCuCG-AGUa--CCUGCgCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 117511 0.74 0.373163
Target:  5'- aGCGCGGA-CUCAcGGGC-CGCUCGGg -3'
miRNA:   3'- aUGCGCCUcGAGUaCCUGcGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 77626 0.73 0.406521
Target:  5'- cGCGCGGAGC---UGGACGUGUaCGAc -3'
miRNA:   3'- aUGCGCCUCGaguACCUGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 122687 0.73 0.406521
Target:  5'- cGCGCGGcGGC-CGUGGAgcuCGCGCUCu- -3'
miRNA:   3'- aUGCGCC-UCGaGUACCU---GCGCGAGcu -5'
29529 5' -58.1 NC_006151.1 + 128828 0.73 0.423887
Target:  5'- gUACGCGGcGCUC-UGGGCcuuGUGCUUGAa -3'
miRNA:   3'- -AUGCGCCuCGAGuACCUG---CGCGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.