miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 3' -55.1 NC_006151.1 + 52005 0.82 0.203696
Target:  5'- gGCGUGCAGCUugcgccGCGCCAGCUCc-UCGGc -3'
miRNA:   3'- -CGCAUGUCGA------CGCGGUCGAGcaAGCU- -5'
29532 3' -55.1 NC_006151.1 + 59422 0.8 0.260455
Target:  5'- ---aGCAGCgGCGCCAGCUCGgcgUCGGc -3'
miRNA:   3'- cgcaUGUCGaCGCGGUCGAGCa--AGCU- -5'
29532 3' -55.1 NC_006151.1 + 69646 0.75 0.456283
Target:  5'- cGCGUGCGGC-GcCGCCGGgUCGU-CGAa -3'
miRNA:   3'- -CGCAUGUCGaC-GCGGUCgAGCAaGCU- -5'
29532 3' -55.1 NC_006151.1 + 69680 0.74 0.504056
Target:  5'- cGCGU-CAGCUGCGCCucGC-CGU-CGAu -3'
miRNA:   3'- -CGCAuGUCGACGCGGu-CGaGCAaGCU- -5'
29532 3' -55.1 NC_006151.1 + 95213 0.72 0.63604
Target:  5'- aGCGaGCGGCUGCGCCGcacgccCUCGacCGAg -3'
miRNA:   3'- -CGCaUGUCGACGCGGUc-----GAGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 71983 0.72 0.646379
Target:  5'- gGCGgggGCAGCUgguaGCGCCGGC-CGUUgcUGAa -3'
miRNA:   3'- -CGCa--UGUCGA----CGCGGUCGaGCAA--GCU- -5'
29532 3' -55.1 NC_006151.1 + 85153 0.71 0.667014
Target:  5'- cGCGUGCGGCaggGgGCCGGCgccgCGggCGc -3'
miRNA:   3'- -CGCAUGUCGa--CgCGGUCGa---GCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 73601 0.71 0.687533
Target:  5'- gGgGUGCAGCUgGCGCCgcAGCUgGUgggUGAa -3'
miRNA:   3'- -CgCAUGUCGA-CGCGG--UCGAgCAa--GCU- -5'
29532 3' -55.1 NC_006151.1 + 88456 0.71 0.687533
Target:  5'- cGCGUGCGGC-GC-CCgAGCUCGU-CGGc -3'
miRNA:   3'- -CGCAUGUCGaCGcGG-UCGAGCAaGCU- -5'
29532 3' -55.1 NC_006151.1 + 26979 0.71 0.707865
Target:  5'- cGCGcugcGCAGCgggGCGCuCuGCUCGggCGAg -3'
miRNA:   3'- -CGCa---UGUCGa--CGCG-GuCGAGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 64541 0.71 0.707865
Target:  5'- cGCGUcggggGCGGCgaggccguggcGCGCCAGCUCGa-CGAg -3'
miRNA:   3'- -CGCA-----UGUCGa----------CGCGGUCGAGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 95026 0.7 0.717937
Target:  5'- cGCGUAgCGGCUGUGCUcgaAGC-CGU-CGAa -3'
miRNA:   3'- -CGCAU-GUCGACGCGG---UCGaGCAaGCU- -5'
29532 3' -55.1 NC_006151.1 + 58834 0.7 0.727935
Target:  5'- cGCGgcacaGCAGgUGCGCCAGCgCGUg-GAg -3'
miRNA:   3'- -CGCa----UGUCgACGCGGUCGaGCAagCU- -5'
29532 3' -55.1 NC_006151.1 + 63914 0.7 0.737847
Target:  5'- cGCGUACGcGC-GCGCCguggGGCUCGcgUCGu -3'
miRNA:   3'- -CGCAUGU-CGaCGCGG----UCGAGCa-AGCu -5'
29532 3' -55.1 NC_006151.1 + 64002 0.7 0.737847
Target:  5'- uGCGUGCGGUgcgGCGCCAGg-CGccCGAu -3'
miRNA:   3'- -CGCAUGUCGa--CGCGGUCgaGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 103956 0.7 0.747666
Target:  5'- gGCGcucGCGGC-GCGCCAGCgCGUcggCGAg -3'
miRNA:   3'- -CGCa--UGUCGaCGCGGUCGaGCAa--GCU- -5'
29532 3' -55.1 NC_006151.1 + 121883 0.7 0.766984
Target:  5'- aCGUGCGcGCUGCGCCuggcGCUCGcguacgcgCGGg -3'
miRNA:   3'- cGCAUGU-CGACGCGGu---CGAGCaa------GCU- -5'
29532 3' -55.1 NC_006151.1 + 102886 0.69 0.776464
Target:  5'- cGCGgugGCGGgcCUGCGCCGcCUCGU-CGAc -3'
miRNA:   3'- -CGCa--UGUC--GACGCGGUcGAGCAaGCU- -5'
29532 3' -55.1 NC_006151.1 + 3272 0.69 0.785811
Target:  5'- gGCGcGCGGCgaugUGCGCCAGggCGgccgggUCGAa -3'
miRNA:   3'- -CGCaUGUCG----ACGCGGUCgaGCa-----AGCU- -5'
29532 3' -55.1 NC_006151.1 + 127845 0.69 0.785811
Target:  5'- gGCGUcGCGGCUGCGCCGGaggGggCGc -3'
miRNA:   3'- -CGCA-UGUCGACGCGGUCgagCaaGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.