miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 3' -55.1 NC_006151.1 + 3272 0.69 0.785811
Target:  5'- gGCGcGCGGCgaugUGCGCCAGggCGgccgggUCGAa -3'
miRNA:   3'- -CGCaUGUCG----ACGCGGUCgaGCa-----AGCU- -5'
29532 3' -55.1 NC_006151.1 + 3697 0.67 0.877462
Target:  5'- gGCGcGCGGCgcuucuucuUGCGCC-GCUCGggCGc -3'
miRNA:   3'- -CGCaUGUCG---------ACGCGGuCGAGCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 17412 0.66 0.922381
Target:  5'- cGCGcgGCAGCaGgGCCAGCgagcCGggggCGAu -3'
miRNA:   3'- -CGCa-UGUCGaCgCGGUCGa---GCaa--GCU- -5'
29532 3' -55.1 NC_006151.1 + 21156 0.69 0.804075
Target:  5'- uGCGgagGCuacggaccgGGCUGCGCUuuuAGCUCG-UCGGu -3'
miRNA:   3'- -CGCa--UG---------UCGACGCGG---UCGAGCaAGCU- -5'
29532 3' -55.1 NC_006151.1 + 21599 0.66 0.911344
Target:  5'- gGCGUACGGCgugGCGgCGGCguaggcccgcgggagCGUcCGGc -3'
miRNA:   3'- -CGCAUGUCGa--CGCgGUCGa--------------GCAaGCU- -5'
29532 3' -55.1 NC_006151.1 + 26979 0.71 0.707865
Target:  5'- cGCGcugcGCAGCgggGCGCuCuGCUCGggCGAg -3'
miRNA:   3'- -CGCa---UGUCGa--CGCG-GuCGAGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 35090 0.67 0.891474
Target:  5'- cGCGUGCcgAGCaUGCGCCucgcGCcCGcgCGAg -3'
miRNA:   3'- -CGCAUG--UCG-ACGCGGu---CGaGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 39339 0.69 0.804075
Target:  5'- cGCGgcucggcGCGGCgcgGCGCCGGCUCa-UCGu -3'
miRNA:   3'- -CGCa------UGUCGa--CGCGGUCGAGcaAGCu -5'
29532 3' -55.1 NC_006151.1 + 50177 0.66 0.927836
Target:  5'- cGCGgcCGGCcGCGCCGGU--GUUCa- -3'
miRNA:   3'- -CGCauGUCGaCGCGGUCGagCAAGcu -5'
29532 3' -55.1 NC_006151.1 + 50463 0.67 0.870119
Target:  5'- cGCGgGC-GCUcGCGCCAGCgCGgcgCGAc -3'
miRNA:   3'- -CGCaUGuCGA-CGCGGUCGaGCaa-GCU- -5'
29532 3' -55.1 NC_006151.1 + 52005 0.82 0.203696
Target:  5'- gGCGUGCAGCUugcgccGCGCCAGCUCc-UCGGc -3'
miRNA:   3'- -CGCAUGUCGA------CGCGGUCGAGcaAGCU- -5'
29532 3' -55.1 NC_006151.1 + 53266 0.68 0.854784
Target:  5'- cGCGgcACAGCUgccGCGCguGCUCGaagcgCGAc -3'
miRNA:   3'- -CGCa-UGUCGA---CGCGguCGAGCaa---GCU- -5'
29532 3' -55.1 NC_006151.1 + 54939 0.66 0.927836
Target:  5'- gGCGUGCcacgcGCUGCGCgAGCaCGcgCGc -3'
miRNA:   3'- -CGCAUGu----CGACGCGgUCGaGCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 58834 0.7 0.727935
Target:  5'- cGCGgcacaGCAGgUGCGCCAGCgCGUg-GAg -3'
miRNA:   3'- -CGCa----UGUCgACGCGGUCGaGCAagCU- -5'
29532 3' -55.1 NC_006151.1 + 59121 0.67 0.891474
Target:  5'- gGCGUACAGCUGCcgGUgGGUggcgcccgCGggCGGg -3'
miRNA:   3'- -CGCAUGUCGACG--CGgUCGa-------GCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 59422 0.8 0.260455
Target:  5'- ---aGCAGCgGCGCCAGCUCGgcgUCGGc -3'
miRNA:   3'- cgcaUGUCGaCGCGGUCGAGCa--AGCU- -5'
29532 3' -55.1 NC_006151.1 + 59745 0.66 0.916682
Target:  5'- cGCGcGCAGCaGCuCCugcAGCUCGUccUCGGg -3'
miRNA:   3'- -CGCaUGUCGaCGcGG---UCGAGCA--AGCU- -5'
29532 3' -55.1 NC_006151.1 + 63914 0.7 0.737847
Target:  5'- cGCGUACGcGC-GCGCCguggGGCUCGcgUCGu -3'
miRNA:   3'- -CGCAUGU-CGaCGCGG----UCGAGCa-AGCu -5'
29532 3' -55.1 NC_006151.1 + 64002 0.7 0.737847
Target:  5'- uGCGUGCGGUgcgGCGCCAGg-CGccCGAu -3'
miRNA:   3'- -CGCAUGUCGa--CGCGGUCgaGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 64541 0.71 0.707865
Target:  5'- cGCGUcggggGCGGCgaggccguggcGCGCCAGCUCGa-CGAg -3'
miRNA:   3'- -CGCA-----UGUCGa----------CGCGGUCGAGCaaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.