miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 3' -55.1 NC_006151.1 + 65818 0.68 0.846805
Target:  5'- cGCGguggauggGCGGCcGCGCCAGCgCGgccCGGc -3'
miRNA:   3'- -CGCa-------UGUCGaCGCGGUCGaGCaa-GCU- -5'
29532 3' -55.1 NC_006151.1 + 66552 0.66 0.916098
Target:  5'- cGCGcGCGGCcGCGCCGccguggacccggcGCUCGcgCGc -3'
miRNA:   3'- -CGCaUGUCGaCGCGGU-------------CGAGCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 69646 0.75 0.456283
Target:  5'- cGCGUGCGGC-GcCGCCGGgUCGU-CGAa -3'
miRNA:   3'- -CGCAUGUCGaC-GCGGUCgAGCAaGCU- -5'
29532 3' -55.1 NC_006151.1 + 69680 0.74 0.504056
Target:  5'- cGCGU-CAGCUGCGCCucGC-CGU-CGAu -3'
miRNA:   3'- -CGCAuGUCGACGCGGu-CGaGCAaGCU- -5'
29532 3' -55.1 NC_006151.1 + 71327 0.66 0.910739
Target:  5'- aGCGcgGCGGCUGCGCCGacgacCUCGccgUGGc -3'
miRNA:   3'- -CGCa-UGUCGACGCGGUc----GAGCaa-GCU- -5'
29532 3' -55.1 NC_006151.1 + 71851 0.67 0.884582
Target:  5'- gGCGUACcgucCUGCGCCcccagcgucAGCagGUUCGGg -3'
miRNA:   3'- -CGCAUGuc--GACGCGG---------UCGagCAAGCU- -5'
29532 3' -55.1 NC_006151.1 + 71983 0.72 0.646379
Target:  5'- gGCGgggGCAGCUgguaGCGCCGGC-CGUUgcUGAa -3'
miRNA:   3'- -CGCa--UGUCGA----CGCGGUCGaGCAA--GCU- -5'
29532 3' -55.1 NC_006151.1 + 73601 0.71 0.687533
Target:  5'- gGgGUGCAGCUgGCGCCgcAGCUgGUgggUGAa -3'
miRNA:   3'- -CgCAUGUCGA-CGCGG--UCGAgCAa--GCU- -5'
29532 3' -55.1 NC_006151.1 + 81195 0.66 0.933048
Target:  5'- aGCGUguacgccgggccGCAGUccggGCGCCGGCgCGUgaacaCGAa -3'
miRNA:   3'- -CGCA------------UGUCGa---CGCGGUCGaGCAa----GCU- -5'
29532 3' -55.1 NC_006151.1 + 83094 0.66 0.920697
Target:  5'- cGCGUGCaccucgAGCggGCGCCcgcgccggucgcagAGCUCGggCGc -3'
miRNA:   3'- -CGCAUG------UCGa-CGCGG--------------UCGAGCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 84142 0.68 0.862558
Target:  5'- aGCGgcacgaGgGGCUGUGCCAGCUgCGcgacUCGGc -3'
miRNA:   3'- -CGCa-----UgUCGACGCGGUCGA-GCa---AGCU- -5'
29532 3' -55.1 NC_006151.1 + 85153 0.71 0.667014
Target:  5'- cGCGUGCGGCaggGgGCCGGCgccgCGggCGc -3'
miRNA:   3'- -CGCAUGUCGa--CgCGGUCGa---GCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 85804 0.67 0.891474
Target:  5'- cGCGUGCAGC-GCcaCCAGCUCaacCGGu -3'
miRNA:   3'- -CGCAUGUCGaCGc-GGUCGAGcaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 88456 0.71 0.687533
Target:  5'- cGCGUGCGGC-GC-CCgAGCUCGU-CGGc -3'
miRNA:   3'- -CGCAUGUCGaCGcGG-UCGAGCAaGCU- -5'
29532 3' -55.1 NC_006151.1 + 90237 0.66 0.927836
Target:  5'- cGCGUcGCGGCUG-GCCAGCgcccagccCGcggCGAa -3'
miRNA:   3'- -CGCA-UGUCGACgCGGUCGa-------GCaa-GCU- -5'
29532 3' -55.1 NC_006151.1 + 90914 0.67 0.884582
Target:  5'- aGCGUcaGCAGCccgUGCGCCGuCUCGagCGu -3'
miRNA:   3'- -CGCA--UGUCG---ACGCGGUcGAGCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 95026 0.7 0.717937
Target:  5'- cGCGUAgCGGCUGUGCUcgaAGC-CGU-CGAa -3'
miRNA:   3'- -CGCAU-GUCGACGCGG---UCGaGCAaGCU- -5'
29532 3' -55.1 NC_006151.1 + 95213 0.72 0.63604
Target:  5'- aGCGaGCGGCUGCGCCGcacgccCUCGacCGAg -3'
miRNA:   3'- -CGCaUGUCGACGCGGUc-----GAGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 97373 0.66 0.910739
Target:  5'- gGCGggcGCGGCggggGCGUCGGcCUCGUcCGu -3'
miRNA:   3'- -CGCa--UGUCGa---CGCGGUC-GAGCAaGCu -5'
29532 3' -55.1 NC_006151.1 + 97806 0.66 0.927836
Target:  5'- gGCGcGCGGCcgUGCGCCGGUcgCGguagUUGGu -3'
miRNA:   3'- -CGCaUGUCG--ACGCGGUCGa-GCa---AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.