miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 3' -55.1 NC_006151.1 + 139529 0.67 0.891474
Target:  5'- aGCG-GCAGCgagGCGuCCAGgUCGgggagCGAg -3'
miRNA:   3'- -CGCaUGUCGa--CGC-GGUCgAGCaa---GCU- -5'
29532 3' -55.1 NC_006151.1 + 137006 0.66 0.927836
Target:  5'- cGCGcACGGCgcuggGCGCCcuGCUCGgccugcCGGa -3'
miRNA:   3'- -CGCaUGUCGa----CGCGGu-CGAGCaa----GCU- -5'
29532 3' -55.1 NC_006151.1 + 132758 0.68 0.854784
Target:  5'- gGCGccCAGCaGCGCCGGgccCUCGU-CGAa -3'
miRNA:   3'- -CGCauGUCGaCGCGGUC---GAGCAaGCU- -5'
29532 3' -55.1 NC_006151.1 + 132309 0.68 0.846805
Target:  5'- cGCGUGCAG--GCGCCacgagAGCUCGcgCGc -3'
miRNA:   3'- -CGCAUGUCgaCGCGG-----UCGAGCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 131848 0.66 0.922381
Target:  5'- aGCGggGCGGCcgagacgcGCGCCGGCggCG-UCGGg -3'
miRNA:   3'- -CGCa-UGUCGa-------CGCGGUCGa-GCaAGCU- -5'
29532 3' -55.1 NC_006151.1 + 128220 0.67 0.891474
Target:  5'- gGCGUGCgacgAGCUcguggGCGCCAGgUCGc-CGAu -3'
miRNA:   3'- -CGCAUG----UCGA-----CGCGGUCgAGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 128059 0.68 0.854784
Target:  5'- aGCG-GCGGCUGCGCgGGggCGacCGAc -3'
miRNA:   3'- -CGCaUGUCGACGCGgUCgaGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 127845 0.69 0.785811
Target:  5'- gGCGUcGCGGCUGCGCCGGaggGggCGc -3'
miRNA:   3'- -CGCA-UGUCGACGCGGUCgagCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 122784 0.66 0.927836
Target:  5'- cGUGgGCGGCUGCGCgGcCUCGccCGAc -3'
miRNA:   3'- -CGCaUGUCGACGCGgUcGAGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 122495 0.66 0.922381
Target:  5'- gGCGagACGGC-GCGCCGGCgcgCGgaCGc -3'
miRNA:   3'- -CGCa-UGUCGaCGCGGUCGa--GCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 121883 0.7 0.766984
Target:  5'- aCGUGCGcGCUGCGCCuggcGCUCGcguacgcgCGGg -3'
miRNA:   3'- cGCAUGU-CGACGCGGu---CGAGCaa------GCU- -5'
29532 3' -55.1 NC_006151.1 + 113801 0.69 0.812973
Target:  5'- cGCGcUGCuGCgGCGCCAcggccucgcGCUCGUcucccUCGAg -3'
miRNA:   3'- -CGC-AUGuCGaCGCGGU---------CGAGCA-----AGCU- -5'
29532 3' -55.1 NC_006151.1 + 105290 0.68 0.846805
Target:  5'- cGCGcGCGGCcGCGCCGGCgccucCGAg -3'
miRNA:   3'- -CGCaUGUCGaCGCGGUCGagcaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 104036 0.66 0.916682
Target:  5'- aGCGcGC-GCaGCGCCAGCUCuGggCGc -3'
miRNA:   3'- -CGCaUGuCGaCGCGGUCGAG-CaaGCu -5'
29532 3' -55.1 NC_006151.1 + 103956 0.7 0.747666
Target:  5'- gGCGcucGCGGC-GCGCCAGCgCGUcggCGAg -3'
miRNA:   3'- -CGCa--UGUCGaCGCGGUCGaGCAa--GCU- -5'
29532 3' -55.1 NC_006151.1 + 102886 0.69 0.776464
Target:  5'- cGCGgugGCGGgcCUGCGCCGcCUCGU-CGAc -3'
miRNA:   3'- -CGCa--UGUC--GACGCGGUcGAGCAaGCU- -5'
29532 3' -55.1 NC_006151.1 + 99058 0.68 0.837798
Target:  5'- cGCGUACgugcgcgAGCUGCGCCcgGGCacCGUggcgCGGc -3'
miRNA:   3'- -CGCAUG-------UCGACGCGG--UCGa-GCAa---GCU- -5'
29532 3' -55.1 NC_006151.1 + 97806 0.66 0.927836
Target:  5'- gGCGcGCGGCcgUGCGCCGGUcgCGguagUUGGu -3'
miRNA:   3'- -CGCaUGUCG--ACGCGGUCGa-GCa---AGCU- -5'
29532 3' -55.1 NC_006151.1 + 97373 0.66 0.910739
Target:  5'- gGCGggcGCGGCggggGCGUCGGcCUCGUcCGu -3'
miRNA:   3'- -CGCa--UGUCGa---CGCGGUC-GAGCAaGCu -5'
29532 3' -55.1 NC_006151.1 + 95213 0.72 0.63604
Target:  5'- aGCGaGCGGCUGCGCCGcacgccCUCGacCGAg -3'
miRNA:   3'- -CGCaUGUCGACGCGGUc-----GAGCaaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.