miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 3' -55.1 NC_006151.1 + 128220 0.67 0.891474
Target:  5'- gGCGUGCgacgAGCUcguggGCGCCAGgUCGc-CGAu -3'
miRNA:   3'- -CGCAUG----UCGA-----CGCGGUCgAGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 35090 0.67 0.891474
Target:  5'- cGCGUGCcgAGCaUGCGCCucgcGCcCGcgCGAg -3'
miRNA:   3'- -CGCAUG--UCG-ACGCGGu---CGaGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 71851 0.67 0.884582
Target:  5'- gGCGUACcgucCUGCGCCcccagcgucAGCagGUUCGGg -3'
miRNA:   3'- -CGCAUGuc--GACGCGG---------UCGagCAAGCU- -5'
29532 3' -55.1 NC_006151.1 + 90914 0.67 0.884582
Target:  5'- aGCGUcaGCAGCccgUGCGCCGuCUCGagCGu -3'
miRNA:   3'- -CGCA--UGUCG---ACGCGGUcGAGCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 3697 0.67 0.877462
Target:  5'- gGCGcGCGGCgcuucuucuUGCGCC-GCUCGggCGc -3'
miRNA:   3'- -CGCaUGUCG---------ACGCGGuCGAGCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 50463 0.67 0.870119
Target:  5'- cGCGgGC-GCUcGCGCCAGCgCGgcgCGAc -3'
miRNA:   3'- -CGCaUGuCGA-CGCGGUCGaGCaa-GCU- -5'
29532 3' -55.1 NC_006151.1 + 84142 0.68 0.862558
Target:  5'- aGCGgcacgaGgGGCUGUGCCAGCUgCGcgacUCGGc -3'
miRNA:   3'- -CGCa-----UgUCGACGCGGUCGA-GCa---AGCU- -5'
29532 3' -55.1 NC_006151.1 + 132758 0.68 0.854784
Target:  5'- gGCGccCAGCaGCGCCGGgccCUCGU-CGAa -3'
miRNA:   3'- -CGCauGUCGaCGCGGUC---GAGCAaGCU- -5'
29532 3' -55.1 NC_006151.1 + 53266 0.68 0.854784
Target:  5'- cGCGgcACAGCUgccGCGCguGCUCGaagcgCGAc -3'
miRNA:   3'- -CGCa-UGUCGA---CGCGguCGAGCaa---GCU- -5'
29532 3' -55.1 NC_006151.1 + 128059 0.68 0.854784
Target:  5'- aGCG-GCGGCUGCGCgGGggCGacCGAc -3'
miRNA:   3'- -CGCaUGUCGACGCGgUCgaGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 132309 0.68 0.846805
Target:  5'- cGCGUGCAG--GCGCCacgagAGCUCGcgCGc -3'
miRNA:   3'- -CGCAUGUCgaCGCGG-----UCGAGCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 65818 0.68 0.846805
Target:  5'- cGCGguggauggGCGGCcGCGCCAGCgCGgccCGGc -3'
miRNA:   3'- -CGCa-------UGUCGaCGCGGUCGaGCaa-GCU- -5'
29532 3' -55.1 NC_006151.1 + 105290 0.68 0.846805
Target:  5'- cGCGcGCGGCcGCGCCGGCgccucCGAg -3'
miRNA:   3'- -CGCaUGUCGaCGCGGUCGagcaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 99058 0.68 0.837798
Target:  5'- cGCGUACgugcgcgAGCUGCGCCcgGGCacCGUggcgCGGc -3'
miRNA:   3'- -CGCAUG-------UCGACGCGG--UCGa-GCAa---GCU- -5'
29532 3' -55.1 NC_006151.1 + 113801 0.69 0.812973
Target:  5'- cGCGcUGCuGCgGCGCCAcggccucgcGCUCGUcucccUCGAg -3'
miRNA:   3'- -CGC-AUGuCGaCGCGGU---------CGAGCA-----AGCU- -5'
29532 3' -55.1 NC_006151.1 + 39339 0.69 0.804075
Target:  5'- cGCGgcucggcGCGGCgcgGCGCCGGCUCa-UCGu -3'
miRNA:   3'- -CGCa------UGUCGa--CGCGGUCGAGcaAGCu -5'
29532 3' -55.1 NC_006151.1 + 21156 0.69 0.804075
Target:  5'- uGCGgagGCuacggaccgGGCUGCGCUuuuAGCUCG-UCGGu -3'
miRNA:   3'- -CGCa--UG---------UCGACGCGG---UCGAGCaAGCU- -5'
29532 3' -55.1 NC_006151.1 + 3272 0.69 0.785811
Target:  5'- gGCGcGCGGCgaugUGCGCCAGggCGgccgggUCGAa -3'
miRNA:   3'- -CGCaUGUCG----ACGCGGUCgaGCa-----AGCU- -5'
29532 3' -55.1 NC_006151.1 + 127845 0.69 0.785811
Target:  5'- gGCGUcGCGGCUGCGCCGGaggGggCGc -3'
miRNA:   3'- -CGCA-UGUCGACGCGGUCgagCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 102886 0.69 0.776464
Target:  5'- cGCGgugGCGGgcCUGCGCCGcCUCGU-CGAc -3'
miRNA:   3'- -CGCa--UGUC--GACGCGGUcGAGCAaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.