miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 5' -61.1 NC_006151.1 + 132837 0.82 0.077491
Target:  5'- cGCGGGAcGGCCACCACGGgcGGCCggCCCGg -3'
miRNA:   3'- cCGCCUU-CCGGUGGUGCU--UCGG--GGGC- -5'
29532 5' -61.1 NC_006151.1 + 86172 0.82 0.083702
Target:  5'- cGCGaGAucguGGCCGCCGCGcuGCCCCCGg -3'
miRNA:   3'- cCGC-CUu---CCGGUGGUGCuuCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 70633 0.8 0.113604
Target:  5'- cGGCGGcgccguGGCCGCgCGCGAGGCgCCCGu -3'
miRNA:   3'- -CCGCCuu----CCGGUG-GUGCUUCGgGGGC- -5'
29532 5' -61.1 NC_006151.1 + 130172 0.79 0.125623
Target:  5'- aGGUGGAAGGCCGCgaaGCGGAcGUCCUCGg -3'
miRNA:   3'- -CCGCCUUCCGGUGg--UGCUU-CGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 116540 0.79 0.128807
Target:  5'- cGCGGAAcuGGCCGCCGCGGuugaAGCgCCCGu -3'
miRNA:   3'- cCGCCUU--CCGGUGGUGCU----UCGgGGGC- -5'
29532 5' -61.1 NC_006151.1 + 92575 0.79 0.132065
Target:  5'- cGCuGGAGGGCCGCgAgGuGGCCCCCGa -3'
miRNA:   3'- cCG-CCUUCCGGUGgUgCuUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 2203 0.79 0.132065
Target:  5'- cGCGGGccgguGGGUCuCCACGgcGCCCCCGg -3'
miRNA:   3'- cCGCCU-----UCCGGuGGUGCuuCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 83461 0.78 0.145872
Target:  5'- aGGCccacGAAGGCCGCCGCGcugauGUCCCCGa -3'
miRNA:   3'- -CCGc---CUUCCGGUGGUGCuu---CGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 26355 0.78 0.149155
Target:  5'- cGGCGGcGGGCCGCguCGggGCgcgcgucCCCCGg -3'
miRNA:   3'- -CCGCCuUCCGGUGguGCuuCG-------GGGGC- -5'
29532 5' -61.1 NC_006151.1 + 5064 0.77 0.169057
Target:  5'- aGGCGGAggAGGCCgaggGCCGCGggGCCgCgGc -3'
miRNA:   3'- -CCGCCU--UCCGG----UGGUGCuuCGGgGgC- -5'
29532 5' -61.1 NC_006151.1 + 4533 0.77 0.173229
Target:  5'- aGCGGGuccuGGGCgGCCAUGgcGUCCCCGa -3'
miRNA:   3'- cCGCCU----UCCGgUGGUGCuuCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 117513 0.77 0.177492
Target:  5'- cGCGGAcucacGGGCCGCUcgGggGCCCCCu -3'
miRNA:   3'- cCGCCU-----UCCGGUGGugCuuCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 3635 0.77 0.181848
Target:  5'- cGCGGAGGGCCGCgC-CGGagAGCCCCuCGu -3'
miRNA:   3'- cCGCCUUCCGGUG-GuGCU--UCGGGG-GC- -5'
29532 5' -61.1 NC_006151.1 + 50375 0.76 0.190844
Target:  5'- cGGCGGGggcgagacgcGGGCC-CCGCGGuccucgcgcGGCCCCCc -3'
miRNA:   3'- -CCGCCU----------UCCGGuGGUGCU---------UCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 112588 0.76 0.190844
Target:  5'- cGCGGGcuucguggAGGCCGCCGCGgcGCCgCUGg -3'
miRNA:   3'- cCGCCU--------UCCGGUGGUGCuuCGGgGGC- -5'
29532 5' -61.1 NC_006151.1 + 27828 0.76 0.190844
Target:  5'- gGGgGGAGGaGCCGcacCCGgGAAGCCCCCc -3'
miRNA:   3'- -CCgCCUUC-CGGU---GGUgCUUCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 17192 0.76 0.195487
Target:  5'- aGGUGGAucgGGGCCguGCCcCG-GGCCCCCGa -3'
miRNA:   3'- -CCGCCU---UCCGG--UGGuGCuUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 3089 0.76 0.209514
Target:  5'- aGGCGGcgagcagcgccgaGAGGCCGCCGCGGcgcgGGUCCCa- -3'
miRNA:   3'- -CCGCC-------------UUCCGGUGGUGCU----UCGGGGgc -5'
29532 5' -61.1 NC_006151.1 + 122884 0.76 0.210013
Target:  5'- -cCGGAccGGGCCaACCGCGAcGCCCUCGa -3'
miRNA:   3'- ccGCCU--UCCGG-UGGUGCUuCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 130257 0.76 0.210013
Target:  5'- cGCGGAagAGGCCGgCGCGcGGCCCCg- -3'
miRNA:   3'- cCGCCU--UCCGGUgGUGCuUCGGGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.