miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 5' -61.1 NC_006151.1 + 733 0.7 0.461475
Target:  5'- gGGCGG-GGGCUuccgcuCCGCGgcGCCCgCCc -3'
miRNA:   3'- -CCGCCuUCCGGu-----GGUGCuuCGGG-GGc -5'
29532 5' -61.1 NC_006151.1 + 1789 0.66 0.711421
Target:  5'- aGGaGGAGGGCCACCGgGccggggaggcAGGCgCCgGg -3'
miRNA:   3'- -CCgCCUUCCGGUGGUgC----------UUCGgGGgC- -5'
29532 5' -61.1 NC_006151.1 + 2203 0.79 0.132065
Target:  5'- cGCGGGccgguGGGUCuCCACGgcGCCCCCGg -3'
miRNA:   3'- cCGCCU-----UCCGGuGGUGCuuCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 2284 0.67 0.603607
Target:  5'- cGGCGGGGcGCCcgcgGCgGCGAcGGCgCCCGg -3'
miRNA:   3'- -CCGCCUUcCGG----UGgUGCU-UCGgGGGC- -5'
29532 5' -61.1 NC_006151.1 + 2385 0.73 0.324535
Target:  5'- cGGcCGGcAGGCCcucgggGCCGCGGAGCucggcgaggCCCCGg -3'
miRNA:   3'- -CC-GCCuUCCGG------UGGUGCUUCG---------GGGGC- -5'
29532 5' -61.1 NC_006151.1 + 2426 0.68 0.580074
Target:  5'- nGGCGGccGcaggagacgaagacGGGCCGCaGCGGggcgccgAGCCCCCa -3'
miRNA:   3'- -CCGCC--U--------------UCCGGUGgUGCU-------UCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 2672 0.67 0.623307
Target:  5'- uGGCGGcaGAGGCgcaGCgGCucGGCCCCgGg -3'
miRNA:   3'- -CCGCC--UUCCGg--UGgUGcuUCGGGGgC- -5'
29532 5' -61.1 NC_006151.1 + 2708 0.68 0.578121
Target:  5'- aGGCGGGcgaaggAGGCCuCCACGcgggcgaagcaggccGGGCCCaCGa -3'
miRNA:   3'- -CCGCCU------UCCGGuGGUGC---------------UUCGGGgGC- -5'
29532 5' -61.1 NC_006151.1 + 2868 0.66 0.692074
Target:  5'- cGGCc--GGGCCGuCCGCGGgccAGUCCUCGa -3'
miRNA:   3'- -CCGccuUCCGGU-GGUGCU---UCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 3005 0.7 0.479528
Target:  5'- gGGCGuuGAGGCgGCCGauguCGggGCgCCCGg -3'
miRNA:   3'- -CCGCc-UUCCGgUGGU----GCuuCGgGGGC- -5'
29532 5' -61.1 NC_006151.1 + 3089 0.76 0.209514
Target:  5'- aGGCGGcgagcagcgccgaGAGGCCGCCGCGGcgcgGGUCCCa- -3'
miRNA:   3'- -CCGCC-------------UUCCGGUGGUGCU----UCGGGGgc -5'
29532 5' -61.1 NC_006151.1 + 3253 0.66 0.662726
Target:  5'- cGGCGGAgcGGGgCGCCGCGgcGCgCg-- -3'
miRNA:   3'- -CCGCCU--UCCgGUGGUGCuuCGgGggc -5'
29532 5' -61.1 NC_006151.1 + 3383 0.71 0.417991
Target:  5'- aGGCGGcgAGGGCCGCCucgGAGGgCCgCGg -3'
miRNA:   3'- -CCGCC--UUCCGGUGGug-CUUCgGGgGC- -5'
29532 5' -61.1 NC_006151.1 + 3439 0.71 0.392315
Target:  5'- cGGCGGAA-GCCGCCgucgggcGCGggGUgCUCGg -3'
miRNA:   3'- -CCGCCUUcCGGUGG-------UGCuuCGgGGGC- -5'
29532 5' -61.1 NC_006151.1 + 3575 0.72 0.369243
Target:  5'- aGCGGc--GCUugCGcCGggGCCCCCGg -3'
miRNA:   3'- cCGCCuucCGGugGU-GCuuCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 3635 0.77 0.181848
Target:  5'- cGCGGAGGGCCGCgC-CGGagAGCCCCuCGu -3'
miRNA:   3'- cCGCCUUCCGGUG-GuGCU--UCGGGG-GC- -5'
29532 5' -61.1 NC_006151.1 + 3838 0.67 0.602624
Target:  5'- gGGCuGGAGGGCCcggaGCCGgGGAggccggagggggcGCCCgCCGc -3'
miRNA:   3'- -CCG-CCUUCCGG----UGGUgCUU-------------CGGG-GGC- -5'
29532 5' -61.1 NC_006151.1 + 3957 0.66 0.672542
Target:  5'- cGCGGGcccGGGCCG-CGCGgcGgCCUCGg -3'
miRNA:   3'- cCGCCU---UCCGGUgGUGCuuCgGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 4012 0.69 0.526074
Target:  5'- gGGCGaaGAGGGCCGCgGCGuAGGUCCaggCGg -3'
miRNA:   3'- -CCGC--CUUCCGGUGgUGC-UUCGGGg--GC- -5'
29532 5' -61.1 NC_006151.1 + 4363 0.66 0.682327
Target:  5'- gGGCGcaGAGGGCCuCgACGGucGCCUCCc -3'
miRNA:   3'- -CCGC--CUUCCGGuGgUGCUu-CGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.