miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 5' -61.1 NC_006151.1 + 142249 0.67 0.63317
Target:  5'- aGGCGuc-GGUCAUCGCGGcgaggAGCgCCCCGu -3'
miRNA:   3'- -CCGCcuuCCGGUGGUGCU-----UCG-GGGGC- -5'
29532 5' -61.1 NC_006151.1 + 142109 0.7 0.470457
Target:  5'- cGCGGGcuGGGugaagcCCACCGCGAggauGGCgCCCGa -3'
miRNA:   3'- cCGCCU--UCC------GGUGGUGCU----UCGgGGGC- -5'
29532 5' -61.1 NC_006151.1 + 141741 0.7 0.479528
Target:  5'- gGGCGGAGGGgCGCgGgGcgcGCgCCCCGg -3'
miRNA:   3'- -CCGCCUUCCgGUGgUgCuu-CG-GGGGC- -5'
29532 5' -61.1 NC_006151.1 + 141629 0.74 0.259238
Target:  5'- gGGCGGGucGCUGCCGCGGcggcgcggcggGGCCCCgCGg -3'
miRNA:   3'- -CCGCCUucCGGUGGUGCU-----------UCGGGG-GC- -5'
29532 5' -61.1 NC_006151.1 + 141596 0.7 0.479528
Target:  5'- gGGCGaGA--GCCGCCcgGCGAGGCUgCCGg -3'
miRNA:   3'- -CCGC-CUucCGGUGG--UGCUUCGGgGGC- -5'
29532 5' -61.1 NC_006151.1 + 141461 0.66 0.692074
Target:  5'- gGGCGGucuggagccGGGGgCGCCGagucCGAgAGCCUCCGc -3'
miRNA:   3'- -CCGCC---------UUCCgGUGGU----GCU-UCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 139751 0.69 0.506297
Target:  5'- aGGCGGAucguccggacggcGGGCC-CgACGc-GCCCCCc -3'
miRNA:   3'- -CCGCCU-------------UCCGGuGgUGCuuCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 139646 0.74 0.265254
Target:  5'- cGGCGcGggGGUCGCgGCGGGcgcGCCgCCCGa -3'
miRNA:   3'- -CCGC-CuuCCGGUGgUGCUU---CGG-GGGC- -5'
29532 5' -61.1 NC_006151.1 + 139607 0.67 0.652887
Target:  5'- cGGCGGcccguccGGGCgCGgCugGggGCCaUCCGg -3'
miRNA:   3'- -CCGCCu------UCCG-GUgGugCuuCGG-GGGC- -5'
29532 5' -61.1 NC_006151.1 + 139281 0.66 0.711421
Target:  5'- cGGCGGAcGcGCCGCCcuCGgcGUCUgCGg -3'
miRNA:   3'- -CCGCCUuC-CGGUGGu-GCuuCGGGgGC- -5'
29532 5' -61.1 NC_006151.1 + 139193 0.66 0.692074
Target:  5'- uGGCGGucGGGgCGCU--GGAGCUCCUGg -3'
miRNA:   3'- -CCGCCu-UCCgGUGGugCUUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 138645 0.75 0.241858
Target:  5'- cGGacuGGGAGGCCuucaacGCCACGGccaucuacguGGCCCCCa -3'
miRNA:   3'- -CCg--CCUUCCGG------UGGUGCU----------UCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 138178 0.66 0.682327
Target:  5'- uGGCGGAcguGGCCAUgGCGcccgugcugcGGCaCCUCGa -3'
miRNA:   3'- -CCGCCUu--CCGGUGgUGCu---------UCG-GGGGC- -5'
29532 5' -61.1 NC_006151.1 + 138070 0.68 0.563521
Target:  5'- aGGCGGcgcGGa-ACCGCGAGGCCuucuucgCCCGg -3'
miRNA:   3'- -CCGCCuu-CCggUGGUGCUUCGG-------GGGC- -5'
29532 5' -61.1 NC_006151.1 + 137915 0.72 0.361506
Target:  5'- cGGCGGc-GGCUGCCACGGGcgccuGCUCCCc -3'
miRNA:   3'- -CCGCCuuCCGGUGGUGCUU-----CGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 137663 0.65 0.717179
Target:  5'- cGGCGGAcgagcgcccgccguGcGGCUGCCGCGccaagauGGGCUUCCGc -3'
miRNA:   3'- -CCGCCU--------------U-CCGGUGGUGC-------UUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 137408 0.69 0.535594
Target:  5'- cGcCGGggGgcgcccucgccGCCGCCGCGggGUCCgCCu -3'
miRNA:   3'- cC-GCCuuC-----------CGGUGGUGCuuCGGG-GGc -5'
29532 5' -61.1 NC_006151.1 + 137177 0.66 0.68135
Target:  5'- cGGCGGcgcagauguacguGA-GCCGCCACGAGGUguucaaCgCCCGg -3'
miRNA:   3'- -CCGCC-------------UUcCGGUGGUGCUUCG------G-GGGC- -5'
29532 5' -61.1 NC_006151.1 + 136403 0.69 0.516618
Target:  5'- uGCcuGAGcGGCUACgCGCGggGCCCCgCGg -3'
miRNA:   3'- cCGc-CUU-CCGGUG-GUGCuuCGGGG-GC- -5'
29532 5' -61.1 NC_006151.1 + 135495 0.67 0.617392
Target:  5'- aGGCGGcgcgcggccucggccGAGGCCAUCAC---GUCCUCGg -3'
miRNA:   3'- -CCGCC---------------UUCCGGUGGUGcuuCGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.