miRNA display CGI


Results 21 - 40 of 353 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 5' -61.1 NC_006151.1 + 4393 0.68 0.545174
Target:  5'- cGGCGcGggGGuCCGCgGCGcGGCCCg-- -3'
miRNA:   3'- -CCGC-CuuCC-GGUGgUGCuUCGGGggc -5'
29532 5' -61.1 NC_006151.1 + 4533 0.77 0.173229
Target:  5'- aGCGGGuccuGGGCgGCCAUGgcGUCCCCGa -3'
miRNA:   3'- cCGCCU----UCCGgUGGUGCuuCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 4821 0.68 0.568377
Target:  5'- uGGCGGAcgucguccucgucccAGaGCCcCuCGCgGGAGUCCCCGg -3'
miRNA:   3'- -CCGCCU---------------UC-CGGuG-GUG-CUUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 4891 0.68 0.554808
Target:  5'- cGGcCGGAGGGUCggaGCCGgGccaGGGCuCCCCGa -3'
miRNA:   3'- -CC-GCCUUCCGG---UGGUgC---UUCG-GGGGC- -5'
29532 5' -61.1 NC_006151.1 + 5019 0.68 0.554808
Target:  5'- gGGCGGGcuccgGGGCCgggGCCGgGGAGgCCgCGg -3'
miRNA:   3'- -CCGCCU-----UCCGG---UGGUgCUUCgGGgGC- -5'
29532 5' -61.1 NC_006151.1 + 5064 0.77 0.169057
Target:  5'- aGGCGGAggAGGCCgaggGCCGCGggGCCgCgGc -3'
miRNA:   3'- -CCGCCU--UCCGG----UGGUGCuuCGGgGgC- -5'
29532 5' -61.1 NC_006151.1 + 5372 0.7 0.461475
Target:  5'- cGGCGGGgcugucucugcgGGGgCGCCcCGccGUCCCCGg -3'
miRNA:   3'- -CCGCCU------------UCCgGUGGuGCuuCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 5616 0.7 0.470457
Target:  5'- cGGCGGAgGGGgCGCCGCc--GCCgCCGg -3'
miRNA:   3'- -CCGCCU-UCCgGUGGUGcuuCGGgGGC- -5'
29532 5' -61.1 NC_006151.1 + 5661 0.7 0.470457
Target:  5'- cGGCGGGggAGGCUgggGaaGCG-GGCCCCCGc -3'
miRNA:   3'- -CCGCCU--UCCGG---UggUGCuUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 5788 0.72 0.377093
Target:  5'- cGCGGggGaCCAucuCCGCGggGCUgCCGa -3'
miRNA:   3'- cCGCCuuCcGGU---GGUGCuuCGGgGGC- -5'
29532 5' -61.1 NC_006151.1 + 5859 0.74 0.283981
Target:  5'- aGGgGGAcgagcgcccgGGGCCGCCG-GggGCCCCgGc -3'
miRNA:   3'- -CCgCCU----------UCCGGUGGUgCuuCGGGGgC- -5'
29532 5' -61.1 NC_006151.1 + 5923 0.66 0.711421
Target:  5'- cGGCGGccGGGGCC----CGGAGCCggCCCGg -3'
miRNA:   3'- -CCGCC--UUCCGGugguGCUUCGG--GGGC- -5'
29532 5' -61.1 NC_006151.1 + 6158 0.66 0.715262
Target:  5'- cGGCGGccucGGCCuCgGCGGcgucgucggagaagaGGCCgCCCGg -3'
miRNA:   3'- -CCGCCuu--CCGGuGgUGCU---------------UCGG-GGGC- -5'
29532 5' -61.1 NC_006151.1 + 6221 0.66 0.672542
Target:  5'- cGcCGGAGGaGCCGCgGCGccggGAGCCCUgGc -3'
miRNA:   3'- cC-GCCUUC-CGGUGgUGC----UUCGGGGgC- -5'
29532 5' -61.1 NC_006151.1 + 6296 0.75 0.241858
Target:  5'- cGGCGGc-GGCCGCCAgGAGcuggcugaaguuGCCCUCGg -3'
miRNA:   3'- -CCGCCuuCCGGUGGUgCUU------------CGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 6687 0.67 0.642047
Target:  5'- aGCGGAccaauGGCCgauuuucGCCGCGGAcuUCCCCGa -3'
miRNA:   3'- cCGCCUu----CCGG-------UGGUGCUUc-GGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 8239 0.71 0.385055
Target:  5'- cGGCGGGgaGGGCCgggccggcgcGCCGgGAcGCCCCUc -3'
miRNA:   3'- -CCGCCU--UCCGG----------UGGUgCUuCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 8278 0.7 0.45613
Target:  5'- cGGgGGAAagaguguccccgcgcGGgCGCCGCGucccgccccGAGCCCCCGn -3'
miRNA:   3'- -CCgCCUU---------------CCgGUGGUGC---------UUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 8329 0.72 0.331699
Target:  5'- gGGCGcGcGGGCCucgaucgcgcccGCCggacgcggaggcGCGAGGCCCCCGc -3'
miRNA:   3'- -CCGC-CuUCCGG------------UGG------------UGCUUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 8990 0.67 0.623307
Target:  5'- gGGCGau-GGCCGCCGCcaccGCCCCa- -3'
miRNA:   3'- -CCGCcuuCCGGUGGUGcuu-CGGGGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.