miRNA display CGI


Results 21 - 40 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 5' -61.1 NC_006151.1 + 50375 0.76 0.190844
Target:  5'- cGGCGGGggcgagacgcGGGCC-CCGCGGuccucgcgcGGCCCCCc -3'
miRNA:   3'- -CCGCCU----------UCCGGuGGUGCU---------UCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 130257 0.76 0.210013
Target:  5'- cGCGGAagAGGCCGgCGCGcGGCCCCg- -3'
miRNA:   3'- cCGCCU--UCCGGUgGUGCuUCGGGGgc -5'
29532 5' -61.1 NC_006151.1 + 72871 0.75 0.240174
Target:  5'- aGGCGGcGGcGCCcgugucggcgaugaGCCGCGccAGCCCCCGg -3'
miRNA:   3'- -CCGCCuUC-CGG--------------UGGUGCu-UCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 138645 0.75 0.241858
Target:  5'- cGGacuGGGAGGCCuucaacGCCACGGccaucuacguGGCCCCCa -3'
miRNA:   3'- -CCg--CCUUCCGG------UGGUGCU----------UCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 109746 0.75 0.247541
Target:  5'- aGCGGAugccguGGCCGCCGCcguugGAGGCgCCCGc -3'
miRNA:   3'- cCGCCUu-----CCGGUGGUG-----CUUCGgGGGC- -5'
29532 5' -61.1 NC_006151.1 + 120191 0.75 0.230817
Target:  5'- uGGCcccGGAccccaccaAGGgCAgCGCGGAGCCCCCGg -3'
miRNA:   3'- -CCG---CCU--------UCCgGUgGUGCUUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 81999 0.75 0.247541
Target:  5'- cGGCGGccAGGGCgGCCGCGugcGCCgCCGa -3'
miRNA:   3'- -CCGCC--UUCCGgUGGUGCuu-CGGgGGC- -5'
29532 5' -61.1 NC_006151.1 + 87481 0.75 0.225459
Target:  5'- aGCGGca-GCCGCCGCGGccGCCCCCGu -3'
miRNA:   3'- cCGCCuucCGGUGGUGCUu-CGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 100804 0.75 0.230817
Target:  5'- aGGUGGcGGGCgACgGCGAGGCgggCCCCGa -3'
miRNA:   3'- -CCGCCuUCCGgUGgUGCUUCG---GGGGC- -5'
29532 5' -61.1 NC_006151.1 + 17832 0.75 0.220206
Target:  5'- gGGCGGgcGGCCACCacccgcucgcuacACGugccgggcgaugauGCCCCCGa -3'
miRNA:   3'- -CCGCCuuCCGGUGG-------------UGCuu------------CGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 131105 0.75 0.230277
Target:  5'- cGGCGGggGGCCcgGCCGCGGcgcgggaggccgcGGCgCCgCGg -3'
miRNA:   3'- -CCGCCuuCCGG--UGGUGCU-------------UCGgGG-GC- -5'
29532 5' -61.1 NC_006151.1 + 33192 0.75 0.230817
Target:  5'- gGGgGGAuGGCCGgC-CGgcGCCCCCGg -3'
miRNA:   3'- -CCgCCUuCCGGUgGuGCuuCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 40582 0.75 0.230817
Target:  5'- cGGCGGAGGGCUcgGCgGCGGaggaucgucccGGUCCCCu -3'
miRNA:   3'- -CCGCCUUCCGG--UGgUGCU-----------UCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 36127 0.75 0.247541
Target:  5'- cGCGGccgcGGCCggaGCCACGAGGCCgCCCc -3'
miRNA:   3'- cCGCCuu--CCGG---UGGUGCUUCGG-GGGc -5'
29532 5' -61.1 NC_006151.1 + 103686 0.75 0.236284
Target:  5'- cGGCGGggGugcugcgcGCCGCCGUGGAGCaCCCGg -3'
miRNA:   3'- -CCGCCuuC--------CGGUGGUGCUUCGgGGGC- -5'
29532 5' -61.1 NC_006151.1 + 6296 0.75 0.241858
Target:  5'- cGGCGGc-GGCCGCCAgGAGcuggcugaaguuGCCCUCGg -3'
miRNA:   3'- -CCGCCuuCCGGUGGUgCUU------------CGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 86439 0.75 0.230817
Target:  5'- cGGCGccuGGcGCC-CgGCGAGGCCCCCGa -3'
miRNA:   3'- -CCGCcu-UC-CGGuGgUGCUUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 104914 0.74 0.283981
Target:  5'- cGGCGGcgcGCgACCGCGAcggGGCCCUCGa -3'
miRNA:   3'- -CCGCCuucCGgUGGUGCU---UCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 31253 0.74 0.253334
Target:  5'- aGCGGGcGGGCgAgC-CGggGCCCCCGg -3'
miRNA:   3'- cCGCCU-UCCGgUgGuGCuuCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 85159 0.74 0.283981
Target:  5'- cGGCaGggGGCCggcGCCGCGGGcGCCgCCGc -3'
miRNA:   3'- -CCGcCuuCCGG---UGGUGCUU-CGGgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.