miRNA display CGI


Results 41 - 60 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 5' -61.1 NC_006151.1 + 13112 0.66 0.711421
Target:  5'- cGCGGcGGGUCAcgcgcgcucCCGCGAcuucccGGCCCgCGa -3'
miRNA:   3'- cCGCCuUCCGGU---------GGUGCU------UCGGGgGC- -5'
29532 5' -61.1 NC_006151.1 + 30873 0.66 0.711421
Target:  5'- cGGCGGAggaggggggaagAGGCgGCgaGCGGAGCgCgCGg -3'
miRNA:   3'- -CCGCCU------------UCCGgUGg-UGCUUCGgGgGC- -5'
29532 5' -61.1 NC_006151.1 + 98626 0.66 0.711421
Target:  5'- aGUGGugcGCCGCCuucgACGAGGCCCUgGc -3'
miRNA:   3'- cCGCCuucCGGUGG----UGCUUCGGGGgC- -5'
29532 5' -61.1 NC_006151.1 + 132226 0.66 0.711421
Target:  5'- gGGUGGAAGaggcacgucaGCUGCCGCGccuGGUCCCa- -3'
miRNA:   3'- -CCGCCUUC----------CGGUGGUGCu--UCGGGGgc -5'
29532 5' -61.1 NC_006151.1 + 139281 0.66 0.711421
Target:  5'- cGGCGGAcGcGCCGCCcuCGgcGUCUgCGg -3'
miRNA:   3'- -CCGCCUuC-CGGUGGu-GCuuCGGGgGC- -5'
29532 5' -61.1 NC_006151.1 + 59463 0.66 0.701775
Target:  5'- cGCGGccGAGuCCACCuccgGCGAGGCgCCCu -3'
miRNA:   3'- cCGCC--UUCcGGUGG----UGCUUCGgGGGc -5'
29532 5' -61.1 NC_006151.1 + 42999 0.66 0.701775
Target:  5'- cGGgGGAGGGCgGCgGgCGcuuGGCaCCCCu -3'
miRNA:   3'- -CCgCCUUCCGgUGgU-GCu--UCG-GGGGc -5'
29532 5' -61.1 NC_006151.1 + 109937 0.66 0.692074
Target:  5'- cGGCcucuccccuGGgcGGCCucgGCCGCGucuGGCCcaCCCGg -3'
miRNA:   3'- -CCG---------CCuuCCGG---UGGUGCu--UCGG--GGGC- -5'
29532 5' -61.1 NC_006151.1 + 88395 0.66 0.692074
Target:  5'- cGCGGcguccGCgGCCGCGAGGCCCg-- -3'
miRNA:   3'- cCGCCuuc--CGgUGGUGCUUCGGGggc -5'
29532 5' -61.1 NC_006151.1 + 107860 0.66 0.692074
Target:  5'- cGGCGcccgaGAcGGCCcCCcCgGAGGCCCCCc -3'
miRNA:   3'- -CCGC-----CUuCCGGuGGuG-CUUCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 119585 0.66 0.692074
Target:  5'- cGCGcuucGGCgCGCCgACGGAGCCCCa- -3'
miRNA:   3'- cCGCcuu-CCG-GUGG-UGCUUCGGGGgc -5'
29532 5' -61.1 NC_006151.1 + 141461 0.66 0.692074
Target:  5'- gGGCGGucuggagccGGGGgCGCCGagucCGAgAGCCUCCGc -3'
miRNA:   3'- -CCGCC---------UUCCgGUGGU----GCU-UCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 2868 0.66 0.692074
Target:  5'- cGGCc--GGGCCGuCCGCGGgccAGUCCUCGa -3'
miRNA:   3'- -CCGccuUCCGGU-GGUGCU---UCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 18850 0.66 0.693046
Target:  5'- aGGUGGcgacguggccguuguGGGUCAUCACGAgcacguacAGCCCCg- -3'
miRNA:   3'- -CCGCCu--------------UCCGGUGGUGCU--------UCGGGGgc -5'
29532 5' -61.1 NC_006151.1 + 62521 0.66 0.69596
Target:  5'- cGGCGGuaccugcagAAGcGCCugCacggccggggcaacgACGAguaccugcuGGCCCCCGg -3'
miRNA:   3'- -CCGCC---------UUC-CGGugG---------------UGCU---------UCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 123218 0.66 0.69887
Target:  5'- uGGCGGu-GGCCGCCggguuccgcgcACGGcgcgcguucugcgaGGCCgCCGc -3'
miRNA:   3'- -CCGCCuuCCGGUGG-----------UGCU--------------UCGGgGGC- -5'
29532 5' -61.1 NC_006151.1 + 10290 0.66 0.701775
Target:  5'- aGGCGGcGGGCaCGuCC-CGc-GUCCCCGg -3'
miRNA:   3'- -CCGCCuUCCG-GU-GGuGCuuCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 9640 0.66 0.701775
Target:  5'- aGCGGGAGGgagaGgCGCGgcGCCCCgCGc -3'
miRNA:   3'- cCGCCUUCCgg--UgGUGCuuCGGGG-GC- -5'
29532 5' -61.1 NC_006151.1 + 33962 0.66 0.701775
Target:  5'- gGGCGGGacgcGGcGCC-CgCGCGggGacacucuuuCCCCCGg -3'
miRNA:   3'- -CCGCCU----UC-CGGuG-GUGCuuC---------GGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 35403 0.66 0.701775
Target:  5'- gGGCaaGAuGGCCGCCGCGggGgCCg-- -3'
miRNA:   3'- -CCGc-CUuCCGGUGGUGCuuCgGGggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.