miRNA display CGI


Results 41 - 60 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 5' -61.1 NC_006151.1 + 37888 0.74 0.253334
Target:  5'- --gGGGAGGCgACCGuCGAGGCCCUCu -3'
miRNA:   3'- ccgCCUUCCGgUGGU-GCUUCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 41517 0.74 0.253334
Target:  5'- gGGCGGGc-GCCGCggaGCgGAAGCCCCCGc -3'
miRNA:   3'- -CCGCCUucCGGUGg--UG-CUUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 57978 0.74 0.253334
Target:  5'- cGGUGGgcGGCgagcgCGCCGCGGAccGCCUCCGg -3'
miRNA:   3'- -CCGCCuuCCG-----GUGGUGCUU--CGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 141629 0.74 0.259238
Target:  5'- gGGCGGGucGCUGCCGCGGcggcgcggcggGGCCCCgCGg -3'
miRNA:   3'- -CCGCCUucCGGUGGUGCU-----------UCGGGG-GC- -5'
29532 5' -61.1 NC_006151.1 + 69650 0.74 0.259238
Target:  5'- uGCGGc--GCCGCCGggucguCGAAGCCCCCGc -3'
miRNA:   3'- cCGCCuucCGGUGGU------GCUUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 139646 0.74 0.265254
Target:  5'- cGGCGcGggGGUCGCgGCGGGcgcGCCgCCCGa -3'
miRNA:   3'- -CCGC-CuuCCGGUGgUGCUU---CGG-GGGC- -5'
29532 5' -61.1 NC_006151.1 + 38282 0.74 0.265254
Target:  5'- cGCGGcccggcucgccGAGGCCGCCGCGcGGCCcgggCCCGc -3'
miRNA:   3'- cCGCC-----------UUCCGGUGGUGCuUCGG----GGGC- -5'
29532 5' -61.1 NC_006151.1 + 11236 0.74 0.271383
Target:  5'- gGGcCGcGAGGGCCGCgGCGgcGaCCCCCu -3'
miRNA:   3'- -CC-GC-CUUCCGGUGgUGCuuC-GGGGGc -5'
29532 5' -61.1 NC_006151.1 + 101756 0.74 0.271383
Target:  5'- cGGCGGccgccGcGCCGCCgacGCGggGCCCCgGg -3'
miRNA:   3'- -CCGCCuu---C-CGGUGG---UGCuuCGGGGgC- -5'
29532 5' -61.1 NC_006151.1 + 106101 0.74 0.271383
Target:  5'- cGGCGGccAAGGCCGCCGCGGAGacguaCgCGg -3'
miRNA:   3'- -CCGCC--UUCCGGUGGUGCUUCgg---GgGC- -5'
29532 5' -61.1 NC_006151.1 + 11817 0.74 0.277625
Target:  5'- gGGUGGggGGCgGCgGCGGcucGCCCuCCGu -3'
miRNA:   3'- -CCGCCuuCCGgUGgUGCUu--CGGG-GGC- -5'
29532 5' -61.1 NC_006151.1 + 21419 0.74 0.277625
Target:  5'- cGGCGucucgggccucGggGGUCGCgGCGugggguGGCCCCCGg -3'
miRNA:   3'- -CCGC-----------CuuCCGGUGgUGCu-----UCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 104914 0.74 0.283981
Target:  5'- cGGCGGcgcGCgACCGCGAcggGGCCCUCGa -3'
miRNA:   3'- -CCGCCuucCGgUGGUGCU---UCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 85159 0.74 0.283981
Target:  5'- cGGCaGggGGCCggcGCCGCGGGcGCCgCCGc -3'
miRNA:   3'- -CCGcCuuCCGG---UGGUGCUU-CGGgGGC- -5'
29532 5' -61.1 NC_006151.1 + 5859 0.74 0.283981
Target:  5'- aGGgGGAcgagcgcccgGGGCCGCCG-GggGCCCCgGc -3'
miRNA:   3'- -CCgCCU----------UCCGGUGGUgCuuCGGGGgC- -5'
29532 5' -61.1 NC_006151.1 + 32853 0.74 0.283981
Target:  5'- cGGCGGGgauggggaagaAGGCCcgacCCGCGcgggGGGCCCCCu -3'
miRNA:   3'- -CCGCCU-----------UCCGGu---GGUGC----UUCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 23045 0.73 0.290452
Target:  5'- aGCGGgcGGCCGCgGCGA-GCCCaCGa -3'
miRNA:   3'- cCGCCuuCCGGUGgUGCUuCGGGgGC- -5'
29532 5' -61.1 NC_006151.1 + 108433 0.73 0.297037
Target:  5'- uGGCGGGA-GCCGCCucccCGGGccGCCCCCu -3'
miRNA:   3'- -CCGCCUUcCGGUGGu---GCUU--CGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 101238 0.73 0.303063
Target:  5'- cGGCGGggGcaugugcGCCAUCAgCG-AGCUCCCGa -3'
miRNA:   3'- -CCGCCuuC-------CGGUGGU-GCuUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 30431 0.73 0.303738
Target:  5'- aGGaCGGAGGGCgaGCCGcCGccGCCCCCc -3'
miRNA:   3'- -CC-GCCUUCCGg-UGGU-GCuuCGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.