miRNA display CGI


Results 41 - 60 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 5' -61.1 NC_006151.1 + 138178 0.66 0.682327
Target:  5'- uGGCGGAcguGGCCAUgGCGcccgugcugcGGCaCCUCGa -3'
miRNA:   3'- -CCGCCUu--CCGGUGgUGCu---------UCG-GGGGC- -5'
29532 5' -61.1 NC_006151.1 + 102891 0.66 0.682327
Target:  5'- uGGCGGGccuGcGCCGCCucguCGAcucgcuggcGGCCgCCGa -3'
miRNA:   3'- -CCGCCUu--C-CGGUGGu---GCU---------UCGGgGGC- -5'
29532 5' -61.1 NC_006151.1 + 49650 0.66 0.68135
Target:  5'- uGGaGGAggucgagcccuccGGGCCGCgcccggaggaCGCGGAcgcGCCCCCGg -3'
miRNA:   3'- -CCgCCU-------------UCCGGUG----------GUGCUU---CGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 137177 0.66 0.68135
Target:  5'- cGGCGGcgcagauguacguGA-GCCGCCACGAGGUguucaaCgCCCGg -3'
miRNA:   3'- -CCGCC-------------UUcCGGUGGUGCUUCG------G-GGGC- -5'
29532 5' -61.1 NC_006151.1 + 106353 0.66 0.68135
Target:  5'- cGGUGGAcacgcuggacgcGGGCgcgcgccCGCCGCGgcGCCCgCUGc -3'
miRNA:   3'- -CCGCCU------------UCCG-------GUGGUGCuuCGGG-GGC- -5'
29532 5' -61.1 NC_006151.1 + 107463 0.66 0.68135
Target:  5'- cGGCGacgaccuGguGGCCAgCGCGcugccgcuGCCCCCGu -3'
miRNA:   3'- -CCGC-------CuuCCGGUgGUGCuu------CGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 78682 0.66 0.679395
Target:  5'- uGGaCGGGcucuacgccggccgGGGCCucgucGCCGCGAcGGCgCCCGu -3'
miRNA:   3'- -CC-GCCU--------------UCCGG-----UGGUGCU-UCGgGGGC- -5'
29532 5' -61.1 NC_006151.1 + 59060 0.66 0.67646
Target:  5'- aGGCGGGcAGGCgCAguuuauaccucucccCCGCaAAGUCCCCc -3'
miRNA:   3'- -CCGCCU-UCCG-GU---------------GGUGcUUCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 55073 0.66 0.672542
Target:  5'- cGGCGGGcucGGCCGCgGCGc-GCCUCg- -3'
miRNA:   3'- -CCGCCUu--CCGGUGgUGCuuCGGGGgc -5'
29532 5' -61.1 NC_006151.1 + 3957 0.66 0.672542
Target:  5'- cGCGGGcccGGGCCG-CGCGgcGgCCUCGg -3'
miRNA:   3'- cCGCCU---UCCGGUgGUGCuuCgGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 6221 0.66 0.672542
Target:  5'- cGcCGGAGGaGCCGCgGCGccggGAGCCCUgGc -3'
miRNA:   3'- cC-GCCUUC-CGGUGgUGC----UUCGGGGgC- -5'
29532 5' -61.1 NC_006151.1 + 31970 0.66 0.672542
Target:  5'- cGCGGGAcgugcccGCCGCCugGGAGCCggCGa -3'
miRNA:   3'- cCGCCUUc------CGGUGGugCUUCGGggGC- -5'
29532 5' -61.1 NC_006151.1 + 35232 0.66 0.672542
Target:  5'- gGGCGagccgaGAuGGCCGCCGCGggGgCCg-- -3'
miRNA:   3'- -CCGC------CUuCCGGUGGUGCuuCgGGggc -5'
29532 5' -61.1 NC_006151.1 + 42267 0.66 0.672542
Target:  5'- aGCGGggGGUgggAUCGCGAGccucucGCCCCgGg -3'
miRNA:   3'- cCGCCuuCCGg--UGGUGCUU------CGGGGgC- -5'
29532 5' -61.1 NC_006151.1 + 50713 0.66 0.672542
Target:  5'- cGGCGac-GGCCGCCccgGCGGuccAGCugCCCCGg -3'
miRNA:   3'- -CCGCcuuCCGGUGG---UGCU---UCG--GGGGC- -5'
29532 5' -61.1 NC_006151.1 + 82381 0.66 0.672542
Target:  5'- gGGCGcgucGAAGGCCAcgagcuCCGCGcccgaGGGCggCCCCGa -3'
miRNA:   3'- -CCGC----CUUCCGGU------GGUGC-----UUCG--GGGGC- -5'
29532 5' -61.1 NC_006151.1 + 83509 0.66 0.6696
Target:  5'- aGCGGGAagcacaccgucgcGGCCACCggguggcggucaaagACGAccgucaucucgggcgGGCCCUCGa -3'
miRNA:   3'- cCGCCUU-------------CCGGUGG---------------UGCU---------------UCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 122406 0.66 0.662726
Target:  5'- uGGCGGcgcucGCCGCCGUGGAcGCCgCCGa -3'
miRNA:   3'- -CCGCCuuc--CGGUGGUGCUU-CGGgGGC- -5'
29532 5' -61.1 NC_006151.1 + 118156 0.66 0.662726
Target:  5'- cGGCGGuGGcGCCGCUgguGCGcGGCCUgaCCGu -3'
miRNA:   3'- -CCGCCuUC-CGGUGG---UGCuUCGGG--GGC- -5'
29532 5' -61.1 NC_006151.1 + 88971 0.66 0.662726
Target:  5'- cGCGGGAagacGGCgCACC-CGAAGCugaccgcgucCCCCa -3'
miRNA:   3'- cCGCCUU----CCG-GUGGuGCUUCG----------GGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.