miRNA display CGI


Results 21 - 40 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 5' -61.1 NC_006151.1 + 65211 0.66 0.701775
Target:  5'- cGCGaguuGAGGGCCAUgAgGcuaAAGUCCCCGa -3'
miRNA:   3'- cCGC----CUUCCGGUGgUgC---UUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 123218 0.66 0.69887
Target:  5'- uGGCGGu-GGCCGCCggguuccgcgcACGGcgcgcguucugcgaGGCCgCCGc -3'
miRNA:   3'- -CCGCCuuCCGGUGG-----------UGCU--------------UCGGgGGC- -5'
29532 5' -61.1 NC_006151.1 + 62521 0.66 0.69596
Target:  5'- cGGCGGuaccugcagAAGcGCCugCacggccggggcaacgACGAguaccugcuGGCCCCCGg -3'
miRNA:   3'- -CCGCC---------UUC-CGGugG---------------UGCU---------UCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 18850 0.66 0.693046
Target:  5'- aGGUGGcgacguggccguuguGGGUCAUCACGAgcacguacAGCCCCg- -3'
miRNA:   3'- -CCGCCu--------------UCCGGUGGUGCU--------UCGGGGgc -5'
29532 5' -61.1 NC_006151.1 + 139193 0.66 0.692074
Target:  5'- uGGCGGucGGGgCGCU--GGAGCUCCUGg -3'
miRNA:   3'- -CCGCCu-UCCgGUGGugCUUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 60558 0.66 0.692074
Target:  5'- aGGCGcgcgcccaGGAGGCCGaagaagcugucCCcCGccGCCCCCGc -3'
miRNA:   3'- -CCGC--------CUUCCGGU-----------GGuGCuuCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 63425 0.66 0.692074
Target:  5'- aGGCGGgcGGCacguCGCacaGCGAGGCCaggucgagcgUCCGg -3'
miRNA:   3'- -CCGCCuuCCG----GUGg--UGCUUCGG----------GGGC- -5'
29532 5' -61.1 NC_006151.1 + 81370 0.66 0.692074
Target:  5'- cGGCGGGc-GCCAgCGCGAgccgcgccgcGGCgCCCa -3'
miRNA:   3'- -CCGCCUucCGGUgGUGCU----------UCGgGGGc -5'
29532 5' -61.1 NC_006151.1 + 88840 0.66 0.692074
Target:  5'- uGGCGGAgcugaagaGGaGCCGcucCCGCgGGAGCUCCgGg -3'
miRNA:   3'- -CCGCCU--------UC-CGGU---GGUG-CUUCGGGGgC- -5'
29532 5' -61.1 NC_006151.1 + 109937 0.66 0.692074
Target:  5'- cGGCcucuccccuGGgcGGCCucgGCCGCGucuGGCCcaCCCGg -3'
miRNA:   3'- -CCG---------CCuuCCGG---UGGUGCu--UCGG--GGGC- -5'
29532 5' -61.1 NC_006151.1 + 88395 0.66 0.692074
Target:  5'- cGCGGcguccGCgGCCGCGAGGCCCg-- -3'
miRNA:   3'- cCGCCuuc--CGgUGGUGCUUCGGGggc -5'
29532 5' -61.1 NC_006151.1 + 107860 0.66 0.692074
Target:  5'- cGGCGcccgaGAcGGCCcCCcCgGAGGCCCCCc -3'
miRNA:   3'- -CCGC-----CUuCCGGuGGuG-CUUCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 119585 0.66 0.692074
Target:  5'- cGCGcuucGGCgCGCCgACGGAGCCCCa- -3'
miRNA:   3'- cCGCcuu-CCG-GUGG-UGCUUCGGGGgc -5'
29532 5' -61.1 NC_006151.1 + 141461 0.66 0.692074
Target:  5'- gGGCGGucuggagccGGGGgCGCCGagucCGAgAGCCUCCGc -3'
miRNA:   3'- -CCGCC---------UUCCgGUGGU----GCU-UCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 2868 0.66 0.692074
Target:  5'- cGGCc--GGGCCGuCCGCGGgccAGUCCUCGa -3'
miRNA:   3'- -CCGccuUCCGGU-GGUGCU---UCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 18576 0.66 0.682327
Target:  5'- cGGCGGGAGcacagcacGCagaGCCA-GAcGGCCCCCc -3'
miRNA:   3'- -CCGCCUUC--------CGg--UGGUgCU-UCGGGGGc -5'
29532 5' -61.1 NC_006151.1 + 56125 0.66 0.682327
Target:  5'- --gGGGAGGCCuuCCGCGGGuucGCCUUCGc -3'
miRNA:   3'- ccgCCUUCCGGu-GGUGCUU---CGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 96653 0.66 0.682327
Target:  5'- cGGCGGcgAGGGCCcggGCGAcGUCCUCGg -3'
miRNA:   3'- -CCGCC--UUCCGGuggUGCUuCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 138178 0.66 0.682327
Target:  5'- uGGCGGAcguGGCCAUgGCGcccgugcugcGGCaCCUCGa -3'
miRNA:   3'- -CCGCCUu--CCGGUGgUGCu---------UCG-GGGGC- -5'
29532 5' -61.1 NC_006151.1 + 13415 0.66 0.682327
Target:  5'- uGGgGGAgccGGGCCcgcguCCcCGggGCCCgCa -3'
miRNA:   3'- -CCgCCU---UCCGGu----GGuGCuuCGGGgGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.